Sequence
atgc intronic sequence ATGC exonic sequenceCACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCGCAAACCCTTGCTCATTGGATTTGCAACAGTTATAGgtttgtaaactttgctgtcttcacatattgaggctgaggctcatgctagtattttaccctgtgtgagacctgtgttattcttgatttttaccaggagagc...
Basic information
species | Glycine max |
transcript | GLYMA07G01950.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01950.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G52150.2 (Arabidopsis thaliana), 5'ss of exon 15
CACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCGCAAACCCTTGCTCATTGGATTTGCAACAGTTATAGgtttgtaaactttgctgtcttcacatattgaggctgaggc-tcatgctagtattttaccctgtgtgagacctgtgttattcttgatttttaccaggagagc
| ||||||||||||||| | || ||||| | || || | | || ||||||||||||||||| ||||| ||||||| |||||||||| | ||||| ||| | ||||| || || | || || | | || | | | | | | | || ||| || ||
CTCTTTCTCCTTCTCATATCAGCTCACAAGTTGGTCTACGCACTCCTTTGGGTACTCCTGAAGCCCAAACACTTGCTCGTTGGATTTGCCAGAGTTACAGg--tataaaccaaactatcaa-atatgttctaattttcccaccaaatcaacaatgtttagtttactaagatgactcatttacccattgataatag------
upper sequence: GLYMA07G01950.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 15
CACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCGCAAACCCTTGCTCATTGGATTTGCAACAGTTATAGgtttgtaaactttgctgtct---tcacatattgaggctgaggctcatgctagtattttaccctgtgtgagacctgtgttattcttgattttta--ccaggagagc
| || |||||||| ||||| ||||| ||||| || ||| | ||||| |||| |||||||||||||| || ||||||| |||||| | |||| ||||||| || || | ||| | ||| | | | | | | | | ||| | | || | | || | ||| ||||
CTCTCTCTCCTTCGCATTTAAGTTCCCATGCTGGTCTTCGACCACCACTGGGCACTCCTGAAGCGCACACACTTGCTCGTTGGATCAGTCACAGCTATAGgtgtgcctctttaattctctaccttgcatgtatggaatcttgatgacagcaacactttgctattgatgttttaggagatagagggagtcattatgccaga-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6726397|gb|AW310751.1|AW310751EST: GGTACTCATGAAGCGCAAACCTTTGCTCATTGGA-TTGCAACAGTTATAG GTGCTACTTGCGTGTGGAGCTACTTACATCTAATAATGACGGGAATGCATC
genomic: GGTACTCCTGAAGCGCAAACCCTTGCTCATTGGATTTGCAACAGTTATAGgtttgtaaac ... agttttgtagGTGCTACTTGGGTGTGGAGCTACTTAAATCTAATAATGAGGGGAATGAATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACTTTCTCCTTCTCATTTGAGTTCACATGCAGGGCTTAGGTCACCATTGGGTACTCCTGAAGCGCAAACCCTTGCTCATTGGATTTGCAACAGTTATAGgtttgtaaactttgctgtcttcacatattgaggctgaggctcatgctagtattttaccctgtgtgagacctgtgttattcttgatttttaccaggagagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC