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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGGAAAATGGAAAATAGAGCCTGGACTTGCGGCAATATTAATCATGGAGCATGTCCTCTTGTTGACTAAGTTCGGTCTCTCTCGCTTCATTCCTGAGgtgattgttttgcttcccatccactatcattcttccatttcaaagatgcttaatgagagataacaagcttatggtactgttttctttgcag

Basic information

species Glycine max
transcript GLYMA07G01550.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01550.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 5'ss of exon 15
GGAGGGAAAATGGAAAATAGAGCCTGGACTTGCGGCAATATTAATCATGGAGCATGTCCTCTTGTTGACTAAGTTCGGTCTCTCTCGCTTCATTCCTGAGgtga--ttgttttgcttcccatccactatcattcttccatttcaa-agatgcttaatgagaga----taacaagctta--tggtactgttttctttgcag-------------------------------
|||||| ||||||||||||||||| |||||||| |||||  | |||||||||||||| |||||| ||| ||| || ||  ||||||||||  |||||||||| |  || ||    ||  ||||||   ||  |||   ||| | | | ||| ||  ||||| |    |  ||||   |  | | | ||||   |    |                                
GGAGGGGAAATGGAAAATAGAGCCAGGACTTGCAGCAATCCTCATCATGGAGCATGTTCTCTTGCTGATTAAATTTGGGTTCTCTCGCTTTGTTCCTGAGgtaagcttcttcacttttgcatccatgttc--tctcgaattactacacatgtttcctgagaaaatgtttccaagaaaaacttgaattgttccatcataaattacagaacatggaaatctattttctgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15815779|gb|BI788054.1|BI788054
EST:     AGCATGTCCTCTTGTTGACTAAGTTCGGTCTCTCTCGCTTCATTCCTGAG                         GAACCTGCTTGGGTAAGAGCCAACCGTGCAAAACACACTACACAGGCACAG
genomic: AGCATGTCCTCTTGTTGACTAAGTTCGGTCTCTCTCGCTTCATTCCTGAGgtgattgttt ... ttctttgcagGAACCTGCTTGGGTAAGAGCCAACCGTGCAAAACACACTACACAGGCACAG
EST: gi|21675839|gb|BQ628190.1|BQ628190
EST:     AGCATGTCCTCTTGTTGACTAAGTTCGGTCTCTCTCGCTTCATTCCTGAG                         GAACCTGCTTGGGTAAGAGCCAACCGTGCAAAACACACTACACAGGCACAG
genomic: AGCATGTCCTCTTGTTGACTAAGTTCGGTCTCTCTCGCTTCATTCCTGAGgtgattgttt ... ttctttgcagGAACCTGCTTGGGTAAGAGCCAACCGTGCAAAACACACTACACAGGCACAG
EST: gi|209708296|gb|BW683886.1|BW683886
EST:     CTCTCGCTTCATTCCTGAG                         GAACCTGCTTGGGTAAGAGCCAACCGTGCAAAACACACTACACAGGCACAG
genomic: CTCTCGCTTCATTCCTGAGgtgattgttt ... ttctttgcagGAACCTGCTTGGGTAAGAGCCAACCGTGCAAAACACACTACACAGGCACAG