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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagtttttttattcttacctttgctagatacgagagtatgacacatatcttcttagtttctaaagtagatatcattttactccttttcag

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 15
AATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagtt-tttttattcttacctttgctagatacgagagtatgacacatatcttcttagtttctaaagtagatatcattttactccttttcag
  ||||||||||||| ||||||||||||| ||||||  ||||||| || || || ||  |||||||||| | |||| |  | |||| ||| ||||||||||| |||  |     || ||| ||   ||     ||    |    |    ||||||||  |  |  ||     || | |||    |        
GCTTGACAAGTACTTGCATAGTAATGATACTCATGTTGTTGCTGGAGCTTTGCTAGGTATTGGAATTGTCACTTGTGGGGTGAAGAGTGATTGTGATCCTgtaagtggtccactttgttagctactctccccccg----tcccccctgcatcttctttttcccctaataccctaacctttctgccag------

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 15
lower sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 13
AATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagtttttttattcttacctttgctagatacgagagtatgacacatatcttcttagtttctaaagtagatatcattttactccttttcag
  | ||||| || ||||||||||| |||||||  ||| ||||||| ||  | ||||||||||| ||||| |||||| | || |||||||| ||||| ||||||||||||||| ||      |||   | ||  ||   | ||   || |  || |     |  |   |     |||  |  ||| || ||||
TCTCGACAAATATTTCCATAGTAACGATAATCCCGTCGTTGCTGGAGCTCTGCTGGGAGTTGGGATTGTTAATTGTGGCATTAAGAATGATTGTGACCCTgtgagtttttttttt------tttttaatatgggaacctctgtgtcacaatttttcgccattcattctcac--tcagct--ctctttctcag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 15
lower sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 13
AATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagttttt-ttattcttacctttgctagatacgagagtatgacacatatcttcttagtttctaaagtagatatcattttactccttttcag
| | ||||| || ||||||||||||||||||| | |||||||||| ||| | ||||||||||| ||||| |||||| | || ||||| || ||||||||||||||||  | |  |  ||   |||||| |   |    ||   |     || ||   ||   ||     |  |  |       |  || ||||
ACTCGACAAATATTTCCATAGTAATGATAATCCTATCATTGCTGGAGCACTGCTGGGAGTTGGGATTGTAAATTGTGGCATTAAGAACGATTGTGATCCTgtgagttgctgtcgtgtttgattttgctgggaccatttgtgcta-----atatttgcagccactcttccatcttactcagccttatttctcag

upper sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 15
AATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagtttttttattcttacctttgctagatacgagagtatgacacatatcttcttagtttctaaagtagatatcattttactccttttcag
|||||||||||| || || || ||||| || |||||||||||||||||| || | || ||||| ||||| |||||| | || |||||||| || ||||| || ||||   || |  || |   |  |    ||     |||||    | |    ||   | || |  |    ||   |||| || | |||||
AATTGACAAGTATTTTCACAGCAATGACAACCATGTCATTGCTGGTGCACTATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttcccttgtcatttctcatattttgaacatc--tatgat---tgtggaattgtatcctgagat---catatgtttaatcttcttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193522231|gb|FK482104.1|FK482104
EST:     TACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCT                         GCAATGGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAATCAGG
genomic: TACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagttttt ... tccttttcagGCAATGGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAATCAGG
EST: gi|208223861|gb|GE020962.1|GE020962
EST:     TACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCT                         GCAATGGCACTTCTAGGTGACTATATAGATAAAGTAAGACACTTCAATCAG
genomic: TACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagttttt ... tccttttcagGCAATGGCACTTCTAGGTGACTATATAGATAAAG-AAGACACTTCAATCAG
EST: gi|193493116|gb|FK460902.1|FK460902
EST:     TACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCT                         GCAATGGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAATCAGG
genomic: TACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagttttt ... tccttttcagGCAATGGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAATCAGG
EST: gi|193481819|gb|FK446938.1|FK446938
EST:     TACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCT                         GCAATGGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAATCAGG
genomic: TACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagttttt ... tccttttcagGCAATGGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAATCAGG
EST: gi|208067895|gb|GD861405.1|GD861405
EST:     TACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCT                         GCAATGGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAATCAGG
genomic: TACTGGGAGTTGGAATTGTGAATTGTAGTATCAAGAATGACTGTGATCCTgtgagttttt ... tccttttcagGCAATGGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAATCAGG