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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTGCTGTTGGATTCAAGTTAGATAGTCTTCTAAAACTAACTGAAACTCGTGCTTCAAACAGTAAAATGACACTCATGCATTTTCTTTGCAAGgtaatagtcttagttgcattaaatgaagattttactggtggtttacctttctgtttctttctatttgaactccag

Basic information

species Glycine max
transcript GLYMA06G21190.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G21190.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G07740.1 (Arabidopsis thaliana), 5'ss of exon 12
GATCTGCTGTTGGATTCAAGTTAGATAGTCTTCTAAAACTAACTGAAACTCGTGCTTCAAACAGTAAAATGACACTCATGCATTTTCTTTGCAAGgtaatagtcttagttgcattaaatgaagattttactggtggtttacctttctgtttctttctatttgaactccag----------------------------------------
|  ||||||||||||||||||| || ||| |    ||| ||| ||| || |||||| | ||||| || ||||| |||||||||| |||||||||||||  | |   | |   |  | |  | ||| |   |  || |  |  ||  | |         | || |                                              
GCGCTGCTGTTGGATTCAAGTTGGACAGTTTATCGAAATTAAGTGATACACGTGCTGCTAACAGCAAGATGACTCTCATGCATTATCTTTGCAAGgta--aatgacaatcaaaa-agagcaggatctagtttctgatgaaggttattataaaaagtggtctggatcaggagagatacataattctgaaactctcatctttctttttccag

upper sequence: GLYMA06G21190.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv17s0000g06640.t01 (Vitis vinifera), 5'ss of exon 14
GATCTGCTGTTGGATTCAAGTTAGATAGTCTTCTAAAACTAACTGAAACTCGTGCTTCAAACAGTAAAATGACACTCATGCATTTTCTTTGCAAGgtaa--tagtctta-gttgcattaaatgaagattttactggtggtttacctttctgtttctttcta----tttgaactccag------------------
| ||||| |||||||||||||| || |||||| ||||||| ||||| || ||||| || ||||| || |||||||| ||||||| |||||| |||||||  | ||   |  ||   ||   |   | |    |||         ||||||| | |     |     ||  |||| |                   
GTTCTGCGGTTGGATTCAAGTTGGACAGTCTTTTAAAACTCACTGATACACGTGCCTCTAACAGCAAGATGACACTTATGCATTATCTTTGTAAGgtaaggtggttgcatattatgtttccttgtggtgcctctgaaatcaggtctttctggtgcagcagaatatcttatactctaaatttctttctggtgcaac