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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACATCCTGGAGGTTTGCTTTTTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCCgtaagaacatcatctccttatattcgaaagagcacaacacgatttatctgtatatatttgtcttttgtatgtcttccttctggatttttctgccacgttaaatctctcccttgttttctctatctatcag

Basic information

species Glycine max
transcript GLYMA06G17940.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 15
TCACATCCTGGAGGTTTGCTTTTTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCCgtaagaacatcatctccttatattcgaaagagcacaacacgatttatct-gtatatatttgtcttttgtatgtcttccttctggatttttctgccacgttaaatctctcccttgttttctctatctatcag
||||| ||||| |||||||| || ||||| ||||| || || || |||||||||||||| ||||||||||| ||||        | | ||| ||    |||  |     |    |  |  | ||  | |||| |                 |  | || ||| | | ||  | ||                            
TCACACCCTGGTGGTTTGCTCTTCACAAAATTCGGTAGCAACCAAACTGCTCTTCTTGACTTGGCTTTCCCGgtaatgtttagctgtgcttcta---aaaattgtttggccttgtgaacatagtgaaaatttcttcccctgtcaagagtgatgggtatctttgtccaaccatcaa----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301513|gb|FG994753.1|FG994753
EST:     TTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCC                         GATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC
genomic: TTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCCgtaagaacat ... tatctatcagGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC
EST: gi|192318121|gb|FK010945.1|FK010945
EST:     ATCAGACTGCTCTTCTTGATTTGGCTTTCCCC                         GATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC
genomic: ATCAGACTGCTCTTCTTGATTTGGCTTTCCCCgtaagaacat ... tatctatcagGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC
EST: gi|17964497|gb|BM271231.1|BM271231
EST:     TTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCC                         GATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC
genomic: TTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCCgtaagaacat ... tatctatcagGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC