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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCTAAAGGATGCTCCTGTGCTTGGTGCTTTCAATCCTAAGAAGGGTGATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcctacacaagattcccccccatactgatctaagcattgcaattctgtagctgaataaatgtggtcattaaacaggggttggtgaaaattattt...

Basic information

species Glycine max
transcript GLYMA06G17050.4
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17050.3 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 15
GAACCTAAAGGATGCTCCTGTGCTTGGTGCTTTCAATCCTAAGAAGGGTGATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcctacacaagattcccccccatactgatctaagcattgcaattctgtagctgaataa-atgtggtcattaaacaggggttggtgaaaattattt-
||| ||  | || ||||||||  |||||||||| ||||||||||||||||| || ||||||    | |||  ||| || || || ||| |||| |||||||| || |   |  |  |||      |  |   | || ||   |   ||| |||||  |    |  | ||||  |   || || |     ||    ||     
GAATCTTCAAGAAGCTCCTGTCATTGGTGCTTTTAATCCTAAGAAGGGTGACATTGTCCTTGCGCAATTTAGTGCAGATAATTCGTGGAACCGAGCAATGgtgagatttaaatctggatagtttactttcaagttccaattgta--aatactgtattttctcagcaagtgggtaaggaagagcgagatatgtgctttgaaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6481514|gb|AW200785.1|AW200785
EST:     ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG                         GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: gi|7232782|gb|AW568135.1|AW568135
EST:     ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG                         GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: gi|192297582|gb|FG989559.1|FG989559
EST:     ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG                         GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: gi|298180422|gb|HO021975.1|HO021975
EST:     ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG                         GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: gi|51336882|gb|CO980748.1|CO980748
EST:     ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG                         GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: gi|193321728|gb|FK287334.1|FK287334
EST:     ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG                         GTTGTCAACACAACCCCGAAGGACCAGTTGAATCC
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACA-CCCCGA-GGACCAGTTGAATCC
EST: gi|298169310|gb|HO020670.1|HO020670
EST:     ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG                         GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: gi|11687423|gb|BF595099.1|BF595099
EST:     ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATG                         GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
genomic: ATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
EST: gi|6747617|gb|AW318130.1|AW318130
EST:     TCATGCTGACAAATCTTGGTACCGGGCAATG                         GTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA
genomic: TCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcct ... ttgtgtgtagGTTGTCAACACACCCCGAGGACCAGTTGAATCCCCCAACGACTTGTTCGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCTAAAGGATGCTCCTGTGCTTGGTGCTTTCAATCCTAAGAAGGGTGATATAGTCCTTTGTTATTTTCATGCTGACAAATCTTGGTACCGGGCAATGgtaagttcctacacaagattcccccccatactgatctaagcattgcaattctgtagctgaataaatgtggtcattaaacaggggttggtgaaaattattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG