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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGgtaaatatttctttttttttttagtttttccttaagcttctgagttttgttgtttctttaaaaaaaattatgagtactactttattcatcagtttagttcaattcgtatgggggtaacaattggtacttttttttttttttgttttactgttctttaag

Basic information

species Glycine max
transcript GLYMA06G16110.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 15
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGgtaaatatttctttttttttttagtttttccttaagcttctgagttttgttgtttctttaaaaaaaattatgagtactactttattcatcagtttagttcaattcgtatgggggtaacaattggtacttttttttttttttgttttactgttctttaag
||||||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||||||||| || |||||||| |||||  |||| || || ||| ||||||| |||  ||| ||                 |  ||||||   || |  |  ||   | | | |  |  |  |    ||| |||     | |  ||   |    |    | | |   ||  |  ||                              
GGCAAGGGCTGGATTTTATGAGAAACCCATTGCGACTTTGGACTTTGCTTCGTTGTATCCATCCATCATGATGGCATATAACCTATGCTACTGTACTTTGgtaaaaattagtttctt-----------------aatttctga---ttataatacctactacatacagcagaaaca----tttgttctctgatattattgggtattcacaaagctcatgtttactgtttgaag--------------------------

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 15
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGgtaaatatttct---ttttttttttagtttttccttaagcttctgagttttgttgtttctttaaaaaaaattatgagtactactttattcatcagtttagttcaattcgtatgggggtaacaattggtacttttttttttttttgttttactgttctttaag
 |||||  | || || |||||||| |||||||| ||||| |||||||| ||  |||| || || ||||||||||| |||||| | || || |||||  |||||| | |||     |||| |||| | ||| |  |||   |      | |||||  | |     |  || ||  ||| | || |||     |   | |  || ||                                                         
AGCAAGAACAGGTTTCTATGAAAAGCCAATTGCAACTTTGGATTTTGCTTCACTGTACCCGTCAATTATGATGGCATATAATCTGTGCTACTGCACCTTGgtaattcttttgatattttcttttcaatttctatttattttatcatctattgtttatacaccttattaatttgggagcatta-tttccatgttcttgtctttgaag--------------------------------------------------------

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S14_182V6.1 (Physcomitrella patens), 5'ss of exon 15
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGgtaaatatttctttttttttttagtttttccttaagcttctgagttttgttgtttctttaaaaaaaattatgagtactactttattcatcagtttagttcaattcgtatgggggtaacaattggtacttttttttttttttgttttactgttctttaag
 || |  ||||| | |||||| || |||||||||||  | ||||| |||||  ||||||| || |||||||||||||| ||  | ||||| |||||| ||||||      | || |   | ||||  |   ||| ||  ||  |   ||  |||    | |      |      |  | |  ||  |||      |       |  ||||                                                 
TGCCAAAGCTGGGTATTATGACAAGCCAATTGCTACGCTGGATTTCGCATCGCTGTATCCCTCCATTATGATGGCCTACAACCTTTGTTACTGCACTTTGgtaa------ccttctgcatctagtcgtg--ttatgcaacttcgacatgcagttgtactgag---gctctccgttgtttccatagccattgtcagacaatggcttctatga------------------------------------------------

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S54_271V6.1 (Physcomitrella patens), 5'ss of exon 15
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGgtaaatatttctttttttttttagtttttccttaa-gcttctgagttttgttgtttctttaaaaaaaattatgagtactactttattcatcagtttagttcaattcgtatgggggtaacaattggtacttttttttttttttgttttactgttctttaag
 || |  || || |  ||||| || |||||||| ||||| ||||||||||| ||||| || || || |||||||| || ||| | ||||| |||||| ||||||            | ||  | |  |  ||| | ||||   |||    ||||  || |    |   ||     || | ||  |   |    | | | ||   |  | ||     |||| |  |                                   
TGCTAAAGCAGGGTACTATGACAAGCCAATTGCCACTTTGGATTTTGCATCATTGTACCCCTCCATCATGATGGCGTACAATCTTTGTTACTGCACTTTGgtaa----------cctcttacaatcgtggcttgatgctttgaagtgcatttgtacctatgccgacgtttc---ataattctccagatacgcatatcgatctgattttctgaa---aacattcag-----------------------------------

upper sequence: GLYMA06G16110.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ15982 (Selaginella moellendorffii), 5'ss of exon 14
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAATTTATGTTATTGCACTCTGgtaaatatttctttttttttttagtttttccttaagcttctgagttttgttgtttctttaaaaaaaattatgagtactactttattcatcagtttagttcaattcgtatgggggtaacaattggtacttttttttttttttgttttactgttctttaag
 ||||||||||||||||| ||||| |||||||| ||  | |||||||||||  |||| ||||| ||||||||||| || ||| | || ||||||||  |||||         | |  |   || | | |  || |  || ||   ||  ||||||  || |                                                                                                  
AGCAAGGGCTGGATTTTACGAAAAGCCAATTGCCACGCTTGATTTTGCATCACTGTACCCATCAATTATGATGGCTTACAATCTTTGCTATTGCACCTTGgta--------ctgtactccatattgtgtatttga--ttgtggaattacttgttttattcag-------------------------------------------------------------------------------------------------