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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATGGATCAACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAGgtagcaacacagtacttttgcttgcctgtgaagtgagataaatttatgtaatatgtgcaaatatacagttgggtttaattgttttatgttgtctattttg...

Basic information

species Glycine max
transcript GLYMA06G15350.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 15
TCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATGGATCAACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAGgtagcaacacagtacttt---tgcttgcctgtgaa------gtgagataaatttatgtaatatgtgcaaatatacagttgggtttaattgt-tttatgttgtctattttg------------------------------------------
||| ||||||||||| ||||||||||| ||  | ||| |||||||||| ||||| |||||||| || ||||||||  |||||||  |||| ||||||||||||  |  |  |   | |    || |     ||||      |      | ||||||    ||| ||  |    |       |      ||| ||||  |||| | |||||                                          
TCGTGGATGCTACATTGATCAGAGCCAGAGTCTTAATGTTCACATGGAACAACCAAACTTTGGGAAGCTGACTTCTCTGCATTTCCATGCTTGGTCCAAGgtattattaaggctatgtgaaagcatattcctgaactctatgcagcccatatttattctgtatttgtcatgccatgaaaaagaactgctgtctttagattgtgt-ttttgcaaggtctacaagtaaacatggtttcatcttggttgatttag

upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os02g56100.1 (Oryza sativa), 5'ss of exon 15
TCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATGGATCAACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAGgtagcaacac-agt----acttttgcttgcctgtgaagt--gagataaatttatgtaatatgtgcaaatatacagttgggtttaattgttt-tatgttgtctattttg-----------
||| || || || || ||||||||||||||  | ||||| |||||||| ||||| |||||||| || || |||||| |||| ||  | || ||||||||||||  |     |||      |  || |    |   || |  |    || ||  | ||   |   |   | | ||| |   || ||| || | |   |   |||  |||           
TCGTGGTTGTTATATCGATCAGAGCCAAAGTCTTAATATCCACATGGACCAACCGAACTTTGGGAAGCTAACTTCCCTGCACTTCCACGCTTGGTCCAAGgtaaaatttttagtttcagttcatgttcaatttataattctgcatcaagttcttctacagttcacgtttttgcagctatcttgaatagtatatgcatgaactaaattgtttgatgccag

upper sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 15
TCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATGGATCAACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAGgtagcaacacagt--acttttgcttgcctgtgaagtgagataaatttatgtaatatgtgcaaatatacagttgggtttaattgttttatgttgtctattttg---
 || |||||||||||||| ||||| |||||| | ||||| |||||||| ||||| || ||||||||||| || |||||||||||||||||||||||||||||| ||||    |  |||| ||||||    || |  |   |||   |   |||  ||    | ||  |   |    ||  || ||     |  |  |        
CCGTGGATGCTACATAGACCAGAGTCAAAGCCTGAATATACACATGGACCAACCAAATTTTGGAAAACTTACGTCCTTGCATTTTTATGCATGGTCCAAGgtatcaacttctttcacttatgcttgatgatgcatagctgtaatggttcataaagtggtttactaatcttcttatgttgtttcttcctgttcatggacacaaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193483217|gb|FK451046.1|FK451046
EST:     TTTATGCATGGTCCAAG                         GGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCT
genomic: TTTATGCATGGTCCAAGgtagcaacac ... gtcattaaagGGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCT
EST: gi|209726802|gb|BW672503.1|BW672503
EST:     AACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAG                         GGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCT
genomic: AACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAGgtagcaacac ... gtcattaaagGGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCT
EST: gi|193654421|gb|FK600573.1|FK600573
EST:     TTTATGCATGGTCCAAG                         GGTCT-AAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCT
genomic: TTTATGCATGGTCCAAGgtagcaacac ... gtcattaaagGGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCT
EST: gi|208221212|gb|GE019538.1|GE019538
EST:     AACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAG                         GGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGA
genomic: AACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAGgtagcaacac ... gtcattaaagGGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGA
EST: gi|208192373|gb|GD993749.1|GD993749
EST:     AACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAG                         GGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAG
genomic: AACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAGgtagcaacac ... gtcattaaagGGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAG
EST: gi|193676101|gb|FK616951.1|FK616951
EST:     TTTATGCATGGTTCCAAG                         GGTCT-AAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGC
genomic: TTTATGCATGG-TCCAAGgtagcaacac ... gtcattaaagGGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGC
EST: gi|193651046|gb|FK599375.1|FK599375
EST:     TTTATGCATGGTCCAAG                         GGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCT
genomic: TTTATGCATGGTCCAAGgtagcaacac ... gtcattaaagGGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCT