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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATTTGTAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGgtgagagttcactcagattaaattggcttgcttgatatcttgtgatttgaaaatttcttttaattttaagcaagtttaatggcaattttcaatttacttc...

Basic information

species Glycine max
transcript GLYMA06G13330.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os01g46700.1 (Oryza sativa), 5'ss of exon 14
TGTTATTTGTAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGgtgagagttcactcagattaaattggcttgcttgatatcttgtgatttgaaaatttcttttaattttaag---caagtttaatggcaattttcaatttacttc--------------------------------
||| ||||||| |||||| ||||||||||||||||| || | || ||| || ||||||| ||||||||| ||||| |||||||| || ||| | ||||||||       |||| | ||||| |         ||||  ||| |   ||||  | |   ||  | |||      ||| |||  | |||  ||| | | | ||                                  
TGTCATTTGTAGGCAAATACATGGTTCGTGTACACAGTGCTACAGGTGCTCAACTTATTACCATGCCATCTGTGCATCAAGGGCAGGCTATAGGATGGAGgta------cactaacattaactataaccagctgattacttttatgttgatgagtgtgttggagtttgtacttcaattttgcttgcatcttttattcttctcagtctttacatactctgtttttcatggatgcag

upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G170412_T01 (Zea mays), 5'ss of exon 14
TGTTATTTGTAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGgtgagagttcactca--gattaaattggcttgctt--gatatcttgtgatttgaaaatttcttttaattttaagcaagtttaatggcaattttcaatttacttc
||| |||||||||||||| |||||||| ||||| ||||| | || ||| |||||||| | ||||||||| ||||| |||||||| || ||||||||||||||       |||| |  ||| |  ||    || ||   || | |  | ||   || | |  |||   ||||      || | |   || ||||   | |  || 
TGTGATTTGTAAGCAAATACATGGTTCATGTACTCAATGCTACAGGTGCTCTACTTACTACCATGCCATTTGTGCATCAAGGGCAGGCTATCGAATGGAGgtacatcagcactgaacgataactttatgctgatttaaatgtttaataataataataatggtttcctttttctttttgtctca---catttttatgtatggtt-

upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 14
TGTTATTTGTAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGgtgaga---gttcactcagattaaattggcttgcttgatatcttgtgatttgaaaatttct---tttaattttaagcaagtttaatggcaattttcaatttacttc-----
||| || || |||||||| ||||| || || || || ||||||||||| ||||| ||||  |||||||||||||||||  | || || ||| |||||||||| ||     ||   || |||| |    | |   |    |  |  | ||||||  | | ||   |  ||        |  |||  |  || | | || ||| |        
TGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGgtaagtcatattatttctgatttatcccgttccataataagttcttcatttgaccagtactaaatcaaagagctgtaacatttggtaaca-tatgcatttttcgaatgtag

upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 15
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 14
TGTTATTTGTAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGgtgagagttcactcagattaaattggcttgcttgatatcttgtgatttgaaaatttcttttaattttaagcaagtttaatggcaattttcaatttacttc---
||| || || || ||||| ||||| |||||||| || ||||||||||||||||| || |  |||||||||||||| ||  | || |||||| ||||||||||  |  | |  |  || |    |  ||    |    || || |||  ||  |       |  || ||  || | ||     | |  |  ||    |||    
TGTAATATGCAAACAAATACATGGCTCGTGTACTCAGTGTTGCAAGTGTTCTACATACTATCATGCCATGTGTGCCTCCCGAGCTGGTTATAGAATGGAGgtatgcttactgtttgactg---tttctgatctttcttcatgagatcagacgacactgactttttctatacatgcttttgaactaactggaacgatctttttt

upper sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 15
TGTTATTTGTAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGgtgaga-----------gttcactcagattaaattggcttgcttgatatcttgtgatttgaaaatttcttttaattttaagcaagtttaatggcaattttcaatttacttc
 || || ||||||||||| |||||||| || ||||| |||||||||||||||||||| | |||||| |||||||| |||||||| || ||||| ||||||||||||           ||  | |   | |||  |   | | || |  |  |||  ||| || | | |||    |   ||  |||| |  ||  ||||   |         
CGTAATCTGTAAGCAAATACATGGTTCATGCACACAGTGTTGCAAGTGTTCTACTTACTACCATGCAATGTGTGCATCAAGGGCGGGGTATCGTATGGAGgtgagatgctcattgctgtctatttgtaataacatttttggtttaaagtactgtagtttaaagagtacttcatctcaaaaagaagtgtcttg--aattcaga---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207795527|gb|GD766398.1|GD766398
EST:     CTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAG                         TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTAT
genomic: CTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGgtgagagttc ... ttaaatgcagTTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTAT
EST: gi|208262289|gb|GE059664.1|GE059664
EST:     CTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAG                         TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTAT
genomic: CTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGgtgagagttc ... ttaaatgcagTTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTAT
EST: gi|208238085|gb|GE040433.1|GE040433
EST:     CTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAG                         TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTAT
genomic: CTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGgtgagagttc ... ttaaatgcagTTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTAT