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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTGgtaaattaattgatctttgtgctttagatccaaatgggttttcagagcaatttctgatttcccaatatgtttgtatag

Basic information

species Glycine max
transcript GLYMA06G10180.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10180.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 5'ss of exon 15
GAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTGgtaaattaattgatctttgtgctttagatccaaatgggttttcagagcaatttctgatttccc--aatatgtttgtatag------------------
|||||||| ||||||||||||| |||||||||||  || |||||  |||| |||||||||||| ||||||| ||  ||||||    | || |    |   || |||  |||||    |||      | | | ||||  ||   |||| | ||   ||                   
GAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATGgtaaggataatgctaca-gaagttcaga--caaataatcttttga---attctttgatcccctggaataagatttcctaatcttgatctctgttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729064|gb|BU762615.1|BU762615
EST:     TTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTG                         GATTTTATTTATGAGGAGGAGCTAAAGAATTTTGTGGAACAAGGTTCTCTG
genomic: TTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTGgtaaattaat ... gtttgtatagGATTTTATTTATGAGGAGGAGCTAAAGAATTTTGTGGAACAAGGTTCTCTG
EST: gi|14011836|gb|BG726758.1|BG726758
EST:     TTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTG                         GATTTTATTTATGAGGAGGAGCTAAAGAATTTTGTGGAACAAGGTTCTCTG
genomic: TTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTGgtaaattaat ... gtttgtatagGATTTTATTTATGAGGAGGAGCTAAAGAATTTTGTGGAACAAGGTTCTCTG
EST: gi|9259344|gb|BE347421.1|BE347421
EST:     TTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTG                         GATTTTATTTATGAGGAGGAGCTAAAGAATTTTGTGGAACAAGGTTCTCTG
genomic: TTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTGgtaaattaat ... gtttgtatagGATTTTATTTATGAGGAGGAGCTAAAGAATTTTGTGGAACAAGGTTCTCTG