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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGCCGAACATATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCAGAGgtaatgaaccttgctgataattttttctgcctacatatacattcaaatggcgggttttggtcccattattcttcactcatgtaaaactgaagatttgtga...

Basic information

species Glycine max
transcript GLYMA06G00520.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G06120.3 (Arabidopsis thaliana), 5'ss of exon 22
CCGCCGAACATATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCAGAGgtaatgaaccttgctgataattttttctgcctacatatacattcaaatggcgg--gttttggtcccattattcttcactcatgtaaaactgaagatttgtga------------------------------------------------------------------------------
|||  |||  ||||| ||||||||||| ||| | ||||||||||||||||| || || || | |||  |||||||||||   ||||| ||||||||| | |    |||       |   |  |  |      ||| |    | |        |  ||||    ||     |      |  ||   |    ||||||                                                                              
CCGGAGAAGCTATGGTTTTCTATTTGACTGGCTCTATCCTGCACACATGCCACTCCTTTTGAGAGGGGTCTCACATTGGTTCGACACACCAGAGgtattaagttatgcattctgctccattggattgacagaacactggcctagtaataacctgagtccgtgcatagaaaaaatgattctaatccactgcttgtgattttacgccttctgccattttagtgtggttagtggtgccttcattgtctcatctcctcttcttggcttgttgatgtag

upper sequence: GLYMA06G00520.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 5'ss of exon 23
CCGCCGAACATATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCAGAGgtaatgaaccttgctgataattttttctgcctacatatacattcaaatggcgggttttggtcccattattcttcactca-tgtaaaactgaagatttgtga--
|||| |||| || ||  |||||||||||||||||||||||||||| ||||| || ||||| |||||||| || || ||||| || || |||||||| | | |   || | ||  | ||   |   |    ||| |||  |   |   ||     |   || |||    | |||   |||| | |||   | |||   
CCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCCACTTCTCTTGAAAGGCATTTCGCACTGGACCGATACACCAGAGgtgaagtaaaatggttattttcttccttatttg---atatattggacatggaagtggcccttttatcattaagtagtcaacttaaatcagaatggtcgtgtgc