Sequence
atgc intronic sequence ATGC exonic sequenceGTAGGAGAAGCTCTATTGTTTATGAAGTTGGAGTTCAAATGGTTGAAATTTATAACGAACAAGTTCGTGATTTACTATCAAGCAACGGTCCTCAAAAGAGatatccttttcttttctttaatatatattcctggatccacaatagtggaagccttgtgtactaggcttcccttttcattataagttatgcgactctctat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G63640.2 (Arabidopsis thaliana), 5'ss of exon 15
----------------GTAGGAGAAGCTCTATTGTTTATGAAGTTGGAGTTCAAATGGTTGAAATTTATAACGAACAAGTTCGTGATTTACTATCAAGCAACGGTCCTCAAAAGAGatatccttttcttttctttaatata-tattcctggatccacaatagtggaagc-cttgtgtact-aggcttcc--cttttcattataagttatgcgactctctat------------------------------------------------------------------
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TTTCTCTTAACTCAGAGTAGACAAAACACTGTCATGTATGAAGTTGGTGTTCAAATGGTGGAGATATATAATGAGCAAGTTCGTGATATACTTTCTGATGgtggttccagtcgaagatatccttttctaatc--taatatagtgactaaacattttttggagtaggtacactcgtgcatttatatttgcgaccccacagagaaattggtgtggtttagtgctattaggttttactaatgttctgtggttgcgttcaatacaaaatttccttaacttgcatacattag
upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 15
GTAGGAGAAGCTCTATTGTTTATGAAGTTGGAGTTCAAATGGTTGAAATTTATAACGAACAAGTTCGTGATTTACTATCAAGCAACGGTCCTCAAAAGAGatatccttttcttttctttaatata-tattcctggatccacaatagtggaagc-cttgtgtact-aggcttcc--cttttcattataagttatgcgactctctat-------------------------------------------------------------
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GTAGACAAAACACTGTCATGTATGAAGTTGGTGTTCAAATGGTGGAGATATATAATGAGCAAGTTCGTGATATACTTTCTGATGGTGGTTCCAGTCGAAGatatccttttctaatc--taatatagtgactaaacattttttggagtaggtacactcgtgcatttatatttgcgaccccacagagaaattggtgtggtttagtgctattaggttttactaatgttctgtggttgcgttcaatacaaaatttccttaacttgcatac
upper sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G41310.1 (Arabidopsis thaliana), 5'ss of exon 13
-------------GTAGGAGAAGCTCTATTGTTTATGAAGTTGGAGTTCAAATGGTTGAAATTTATAACGAACAAGTTCGTGATTTACTATCAAGCAACGGTCCTCAAAAGAGatatccttttcttttct--ttaat------atatattcctggatccacaatagtggaagccttgtgtactaggcttcccttttcattataagttatgcgactctctat-------------------------
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CACTTAACTCAAAGTAGACAAAACTCAGTGATGTATGAAGTTGGTGTTCAAATGGTTGAGATTTACAATGAGCAAGTTCGTGACCTACTTTCTCAGGATGgtcctaataagagatatccttctctaatctaattaagtatttgacatttttattgatatcattttttttatgttacaaatattaaatttccttaacttgcatacact-tgggatttggaatacttctttaccaaatggcctcgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18690748|gb|BM519596.1|BM519596EST: TATAACGAACAAGTTCGTGATTTACTATCAAGCAACGGTCCTCAAAAGAG ACTTGGGATTTGGAATACTGCCCAACCAAATGGGTTGGCTGTTCCTGATGC
genomic: TATAACGAACAAGTTCGTGATTTACTATCAAGCAACGGTCCTCAAAAGAGatatcctttt ... acttgcacacACTTGGGATTTGGAATACTGCCCAACCAAATGGGTTGGCTGTTCCTGATGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAGGAGAAGCTCTATTGTTTATGAAGTTGGAGTTCAAATGGTTGAAATTTATAACGAACAAGTTCGTGATTTACTATCAAGCAACGGTCCTCAAAAGAGatatccttttcttttctttaatatatattcctggatccacaatagtggaagccttgtgtactaggcttcccttttcattataagttatgcgactctctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccttttc