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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCTGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAAAGCCCCCATGTACCATACAGAAACAGCAAACTTACTCAACTTCTACAAACTTCTCTTGgtaaatctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacag

Basic information

species Glycine max
transcript GLYMA05G35130.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35130.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G18410.1 (Arabidopsis thaliana), 5'ss of exon 16
CTATCTGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAAAGCCCCCATGTACCATACAGAAACAGCAAACTTACTCAACTTCTACAAACTTCTCTTGgtaaatctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacag
|| || || || |||||||| || ||  | ||| ||  ||||||  | |||||||||||||| ||||||||||| ||||| ||||| ||||  ||||| ||| ||     |   ||| | || | |||        || |||| |    ||  | ||||||| |      ||  ||||    | |||||| |   |||||
CTCTCAGCTCTAGGAGATGTGATATTCTCTCTTGCTTCAAAAAGTTCTCATGTACCATACAGGAACAGCAAACTAACTCAGCTTCTCCAAAGCTCTCTAGgttaactccaa---atcttctgctctgtt-----ttttcaatcgtg---atcgaaattttctaac-----ttatctct---gtgtgatttaacatcacag

upper sequence: GLYMA05G35130.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G73860.1 (Arabidopsis thaliana), 5'ss of exon 16
CTATCTGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAAAGCCCCCATGTACCATACAGAAACAGCAAACTTACTCAACTTCTACAAACTTCTCTTGgtaaat---ctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacag
|| ||  | ||||||||||| || ||  | ||  ||  ||| ||  | ||||||||||||||||||||||| || || || ||||| ||||| ||||||||| | |   ||||||  || ||     |  |  ||||  |   |  | |  ||  |    ||||| |||   | || ||  |                     
CTCTCATCTCTTGGAGATGTGATATTCTCTCTCGCTTCAAAGAGTTCTCATGTACCATACAGAAACAGCAAGCTAACACAGCTTCTCCAAACCTCTCTTGgttagtgaactttatatatgata-accacatt-catgaataagaaatatcataacttttgtttct-atgtgatgtggcttatag-------------------

upper sequence: GLYMA05G35130.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 5'ss of exon 17
CTATCTGCCCTTGGAGATGTTATTTTTGCCCTTTCTCAAAAAAGCCCCCATGTACCATACAGAAACAGCAAACTTACTCAACTTCTACAAACTTCTCTTGgtaaatctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacag---------------------------------------------------
||||||||||||||||||||||| ||||| ||| | || || ||| | ||||||||||||||||||||||| ||||||||| | || || | |||||||||||  ||  | ||   || ||| | |     ||   |    ||   | | |     |||  | | ||   |  | | ||  ||| | |   | |   |                                                     
CTATCTGCCCTTGGAGATGTTATCTTTGCTCTTGCCCAGAAGAGCTCTCATGTACCATACAGAAACAGCAAGCTTACTCAAGTCCTTCAGAGTTCTCTTGgtacttcactgttttccagttgcttttagcaataaatcccttcacctgtcttattgtttcgtcaggactctaaattatttccttagctcccaatagtcctctttttgaacttcatatagcggatttttattttctactttataaactacag