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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTGTTAATGCTGCTAAGGATGCCACTGAGCTGGTGGCAAAATTACGGGCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgcttactagtaatagtatctatattgtttcctttgtatttgttttcttcctagcttcgggtctgtttgttgaatttatctttgttatgtcatta...

Basic information

species Glycine max
transcript GLYMA05G29870.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7589251|gb|AW705029.1|AW705029
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|57575315|gb|CX548290.1|CX548290
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|13482485|gb|BG511828.1|BG511828
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TNTGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|23727410|gb|BU761735.1|BU761735
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|57575079|gb|CX548054.1|CX548054
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|22932667|gb|BU549806.1|BU549806
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|7589348|gb|AW705124.1|AW705124
EST:     GCCTACCACCATTCAGCGCANACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|58018371|gb|CX705113.1|CX705113
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|20448998|gb|BQ253122.1|BQ253122
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTT
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTT
EST: gi|58016681|gb|CX703423.1|CX703423
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|298170514|gb|HO019138.1|HO019138
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|58016928|gb|CX703670.1|CX703670
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: gi|254334340|gb|GR844125.1|GR844125
EST:     GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG                         TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCTGTTAATGCTGCTAAGGATGCCACTGAGCTGGTGGCAAAATTACGGGCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgcttactagtaatagtatctatattgtttcctttgtatttgttttcttcctagcttcgggtctgtttgttgaatttatctttgttatgtcatta

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