Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGGgtatgttctttgagaaagctagcaattctattattaattagtttttctatttccatttattcattcagctggcctttaagcgttatcttttgtattttgt...

Basic information

species Glycine max
transcript GLYMA05G28950.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28950.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv06s0004g00500.t01 (Vitis vinifera), 5'ss of exon 13
GTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGGgtatgttctttgagaaagctagcaattctattattaattagtttttctatttccatttattcattcagctggcctttaagcgttatcttttgtattttgt-
|||||||| || ||||||||||||||||| || ||||| ||    |||||||| |||||||||||  || | |||||||| ||||||||||||||| |||||   | |||  |  |  | |  || |      |  ||| | |||   |||    |  ||  ||     |||   ||||   |   |    || 
GTGGGTGAAATTTTGGGAACTTTGATCAAGACATTCAAGGCATCTTTCTTGCCATTCTTTGATGAGTTAGCTTCATATCTCACACCTATGTGGgtaagttctactacaaa-ttgcccctccctttgtgctaaggccttttttttttttttttaataggcacatgcgaaataaaatttataaatatgaaagggta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820642|gb|BE556152.1|BE556152
EST:     ACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGG                         GGAAGGGACAAGACTCCAGAAGAGAGAAGAATTGCAATTTGTATTGTTGAT
genomic: ACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGGgtatgttctt ... ttggatatagGGAAGGGACAAGACTCCAGAAGAGAGAAGAATTGCAATTTGTATTTTTGAT
EST: gi|21677277|gb|BQ629628.1|BQ629628
EST:     ACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGG                         GGAAGGGACAAGACTCCAGAAGAGAGAAGAATTGCAATTTGTATTTTTGAT
genomic: ACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGGgtatgttctt ... ttggatatagGGAAGGGACAAGACTCCAGAAGAGAGAAGAATTGCAATTTGTATTTTTGAT
EST: gi|21887848|gb|BQ741061.1|BQ741061
EST:     ACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGG                         GGAAGGGACAAGACTCCAGAAGAGAGAAGAATTGCAATTTGTATTTTTGAT
genomic: ACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGGgtatgttctt ... ttggatatagGGAAGGGACAAGACTCCAGAAGAGAGAAGAATTGCAATTTGTATTTTTGAT
EST: gi|17153820|gb|BM143753.1|BM143753
EST:     ACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGG                         GGAAGGGACAAGACTCCAGAAGAGAGAAGAATTGCAATTTGTATTTTTGAT
genomic: ACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGGgtatgttctt ... ttggatatagGGAAGGGACAAGACTCCAGAAGAGAGAAGAATTGCAATTTGTATTTTTGAT