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GTGAATGCAATTCAATTGAAGGAGACAGTCGAGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttctttcccttcaaatgttccccacttttttggagctgatgctttggtttaggtaatgtttggattagtaaaaggggatgaaatggagtggaa...
species | Glycine max |
transcript | GLYMA05G27240.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAG ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACEST: gi|23733442|gb|BU764920.1|BU764920
genomic: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttc ... catggttcagATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCAC
EST: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAG ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACEST: gi|12773136|gb|BG238063.1|BG238063
genomic: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttc ... catggttcagATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCAC
EST: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAG ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACEST: gi|31471408|gb|CD413436.1|CD413436
genomic: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttc ... catggttcagATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCAC
EST: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAG ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACEST: gi|19346215|gb|BM891095.1|BM891095
genomic: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttc ... catggttcagATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCAC
EST: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAG ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTEST: gi|27809423|gb|CB063845.1|CB063845
genomic: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttc ... catggttcagATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGT
EST: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAG ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACEST: gi|209698239|gb|BW667542.1|BW667542
genomic: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttc ... catggttcagATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCAC
EST: CCATGACCGTCAATATCAG ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACEST: gi|7690871|gb|AW759008.1|AW759008
genomic: CCATGACCGTCAATATCAGgttaatgttc ... catggttcagATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCAC
EST: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAG ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACEST: gi|31305219|gb|CD390422.1|CD390422
genomic: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttc ... catggttcagATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCAC
EST: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAG ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCACEST: gi|7686211|gb|AW756922.1|AW756922
genomic: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttc ... catggttcagATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCAC
EST: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAG ATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTACTCAC
genomic: AGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttc ... catggttcagATTGATGCTGCTATTGTGAGGATAATGAAGACTAGAAAAGTGCTTAGTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAATGCAATTCAATTGAAGGAGACAGTCGAGGAGAACACAAGCACCACCGAAAGAGTTTTCCATGACCGTCAATATCAGgttaatgttctttcccttcaaatgttccccacttttttggagctgatgctttggtttaggtaatgtttggattagtaaaaggggatgaaatggagtggaa
- - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagtgg