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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatctttcttctttcctttgtttatttttcttattttattaatattcaagtctcatgaaaggcatcatagtaagttgcactttttgcttgcactgctatcttgacatggtttgcag

Basic information

species Glycine max
transcript GLYMA05G25780.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 9
GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatctttcttctttcctttgtttatttttcttattttattaat---attcaagtctcatgaaaggcatcatagtaagttgcactttttgcttgcactgctatcttgacatggtttgcag
||||| ||||||||| ||||| || ||||||||||||| | | || || || ||||||||||| ||||||||||| || || || || ||  |  |||||||   |   ||||   ||  | |   |  ||   |    |  | |   ||||||   |||| ||| | ||  |  |    |  |  |  |   ||||                        
GTCTAGCATGCCAAATGGACAACCAAAGTGGCTTCTTTGTTTCATACCAGATTATCCTATGCTTAACTTCATGCTTACTACAGCGATCTATCTTCTTgtaagttgccaacttcaaacccatctcagtacttggaaagaaaacagttccattcaacagtcataaaaaggatactcatttcat-tatctaataaatgcag-----------------------

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G46340.1 (Arabidopsis thaliana), 5'ss of exon 15
GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatctttcttctttcctttgtttatttttcttattttattaatattcaagtctcatgaaaggcatcatagtaagttgcactttttgcttgcactgctatcttgacatggtttgcag
 || ||||||||  |||| || || || |||||||| ||| |||| ||||  || ||||||||||| |||||||| |||||||||||||||||| ||||||| | |  |    | | || |     | ||     || |||||     ||||  |  |||||  ||||    |  |||    | || ||  |                          
ATCAAACATGCCTGACGGGCAACCAAAATGGCTTCTCTCTATTATTCCGGGATACCCTATGCTCAATTTCATGCTGACAACTGCTATATACGTCCTTgtaagaaaccgtaacttcttctctccccgtatt-----ttctattag----caagctttctgaaa--catctctatttgttct--tgttcgccag--------------------------

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv07s0005g05580.t01 (Vitis vinifera), 5'ss of exon 1
---GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatctttcttctttcctttgtttatttttcttattttattaatattcaagtctcatgaaaggcatcatagtaagttgcactttttgcttgcactgctatcttgacatggtttgcag
    || |||| ||| || |||||||| |||||||||||||||||||| || || ||| |  |||||||||||||||| |||||||| || ||  |||| ||||| |  ||| | |         || ||  |||  ||||||| | |    ||  || |||||   |  | |  | | ||||   | |||    | ||||                    
CAGATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTCTTATTCCAGATTATTCGCTGCTCAACTTCATGCTCACAACTGCCATCTATATCTTAgtaagcagatttttcc---------ttgatgcttcaaattttataagtgaaaaatactaatgaatctc-ccttttttatttgcttgtgttgtcctctctgcag------------------

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv00s0650g00030.t01 (Vitis vinifera), 5'ss of exon 1
---GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatctttcttctttcctttgtttatttttcttattttattaatattcaagtctcatgaaaggcatcatagtaagttgcactttttgcttgcactgctatcttgacatggtttgcag
    || |||| ||| || |||||||| |||||||||||||||||||| || || ||| |  |||||||||||||||| |||||||| || ||  |||| ||||| |  ||| | |         || ||  |||  ||||||| | |    ||  || |||||   |  | |  | | ||||   | |||    | ||||                    
CAGATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTCTTATTCCAGATTATTCGCTGCTCAACTTCATGCTCACAACTGCCATCTATATCTTAgtaagcagatttttcc---------ttgatgcttcaaattttataagtgaaaaatactaatgaatctc-ccctttttatttgcttgtgttgtcctctctgcag------------------

upper sequence: GLYMA05G25780.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv10s0003g02830.t01 (Vitis vinifera), 5'ss of exon 9
GTCTAACATGCCAAACGGACAGCCCAAGTGGCTTCTTTCTCTTATCCCGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatctttcttctttcctttgtttatttttcttattttattaatattcaagtctcatgaaaggcatcatagtaagttgcactttttgcttgcactgctatcttgacatggtttgcag
 || |||| ||| || |||||||| ||||||||||||||| |||| || || |||||  |||||||||||||||| || ||||| || ||  |||| ||||| |  ||| | |         || ||  |||  ||||||  | |    ||  || |||||   | || |  | | ||||   | |||    | ||||                    
ATCAAACAAGCCTAATGGACAGCCTAAGTGGCTTCTTTCTTTTATTCCAGATTATCCGTTGCTCAACTTCATGCTCACGACTGCCATCTATATCTTAgtaagcagatttttcc---------ttgatgcttcaaattttacaagtgaaaaatactaatgaatctc-tcttttttacttgcttgtgttgtcctctctgcag------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192332806|gb|FK026807.1|FK026807
EST:     TCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
genomic: TCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
EST: gi|254338250|gb|GR849775.1|GR849775
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
EST: gi|58014756|gb|CX701498.1|CX701498
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
EST: gi|193565843|gb|FK526348.1|FK526348
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
EST: gi|51337283|gb|CO981149.1|CO981149
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
EST: gi|192300083|gb|FG991873.1|FG991873
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
EST: gi|208326566|gb|GE124910.1|GE124910
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTCAAGACAGTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
EST: gi|207688258|gb|GD672597.1|GD672597
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATTTCATCG
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCG
EST: gi|31463811|gb|CD405839.1|CD405839
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
EST: gi|192332805|gb|FK026806.1|FK026806
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
EST: gi|26057405|gb|CA800319.1|CA800319
EST:     CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTT                         GTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA
genomic: CGGAGTATCCTATGCTCAACTTCATGCTAACAACTGCTATATACGTCTTTgtaaggatct ... tggtttgcagGTATCTCATCGACTTTTTGAATTAACAAATACACTTAAGACAGTGTTCATA