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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAGgtgaggggtcactcagattaaagtggcttgcttgatatcttgtgattttaaattttcttttaattttaagcaagtttaatggcaattttcaatttacttc...

Basic information

species Glycine max
transcript GLYMA04G41500.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os01g46700.1 (Oryza sativa), 5'ss of exon 14
TGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAGgtgaggggtcactcagattaaa-gtggcttgcttgatatcttgtgattttaaattttcttttaattttaag--caagtttaatggcaattttcaatttacttc--------------------------------
||| ||||| | |||||| ||||||||||||||||| || | || ||| || ||||||| ||||||||| ||||| |||||||| || ||| | ||||||||       |||| | |||||   |  |  |||   ||  ||    ||    | | | ||  | |||  |   ||| |||  | |||  ||| | | | ||                                  
TGTCATTTGTAGGCAAATACATGGTTCGTGTACACAGTGCTACAGGTGCTCAACTTATTACCATGCCATCTGTGCATCAAGGGCAGGCTATAGGATGGAGgta------cactaacattaactataaccagctgattacttttatgttgatgagtgtgttggagtttgtacttcaattttgcttgcatcttttattcttctcagtctttacatactctgtttttcatggatgcag

upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G170412_T01 (Zea mays), 5'ss of exon 14
TGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAGgtgaggggtcactca--gattaaagtggcttgctt--gatatcttgtgattttaaattttcttttaattttaagcaagtttaatggcaattttcaatttacttc
||| ||||| |||||||| |||||||| ||||| ||||| | || ||| |||||||| | ||||||||| ||||| |||||||| || ||||||||||||||       |||| |  ||| |   |    || ||   || | |  | ||  |||   |  |||   ||||      || | |   || ||||   | |  || 
TGTGATTTGTAAGCAAATACATGGTTCATGTACTCAATGCTACAGGTGCTCTACTTACTACCATGCCATTTGTGCATCAAGGGCAGGCTATCGAATGGAGgtacatcagcactgaacgataactttatgctgatttaaatgtttaataataataataatggtttcctttttctttttgtctca---catttttatgtatggtt-

upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 14
TGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAGgtgaggggtcactcagattaaagtggcttgcttgatatcttgtgattttaaattttcttttaatt--ttaagcaagtttaatggcaattttca-atttacttc----------
||| || ||||||||||| ||||| || || || || ||||||||||| ||||| ||||  |||||||||||||||||  | ||||| ||| |||||||||| ||   | | |     | |  |  |  | |  |||    ||  | || | ||  |   || |   | ||  |  | |||       |  || ||  | ||           
TGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGgtaagtcat-attatttctgatttatcccgttccataataagt--tcttcatttgaccagtactaaatcaaagagctgtaacatttggtaacatatgcatttttcgaatgtag

upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 15
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 5'ss of exon 14
TGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAGgtgaggggtcactcagatta-----aagtggcttgcttgatatcttgtgattttaaattttcttttaattttaagcaagtttaatggcaattttcaatttacttc
||| || ||||| ||||| ||||| |||||||| || ||||||||||||||||| || |  |||||||||||||| ||  | ||||||||| ||||||||||  |    |  |  || |       |      | | ||| |||    ||   | | ||||  | ||  |       |  | | ||| |   |    |||     
TGTAATATGCAAACAAATACATGGCTCGTGTACTCAGTGTTGCAAGTGTTCTACATACTATCATGCCATGTGTGCCTCCCGAGCTGGTTATAGAATGGAGgtatgcttactgtttgactgtttctgatctttcttcatgagatcagacgacactgactttttctatacatgcttttgaactaactggaacgatctttttt-----

upper sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 15
TGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAGgtgaggggtc-----------actcagattaaagtggcttgcttgatatcttgtgattttaaattttcttttaattttaagcaagtttaatggcaattttcaatttacttc
 || || || |||||||| |||||||| || ||||| |||||||||||||||||||| | |||||| |||||||| |||||||| || ||||| |||||||||||  |             | |   | |||  |   | | || |  |  |||  ||| ||   | |||    |   ||  |||| |  ||  ||||   |         
CGTAATCTGTAAGCAAATACATGGTTCATGCACACAGTGTTGCAAGTGTTCTACTTACTACCATGCAATGTGTGCATCAAGGGCGGGGTATCGTATGGAGgtgagatgctcattgctgtctatttgtaataacatttttggtttaaagtactgtagtttaaagagtacttcatctcaaaaagaagtgtcttg--aattcaga---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406528|gb|EV276343.1|EV276343
EST:     CTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAG                         TTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCTTAT
genomic: CTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAGgtgaggggtc ... ttaaatgcagTTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCTTAT