Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAACTTATGTTATTGCACTCTGgtaaatatttcattttttttattagtttttccttgagcttaagttttgttttttctttataaaaaattatgagtactactttattcatcagattagttcaattcgtatggagtaacaactggtagataattttgtttttgtttttactgtttgttaag

Basic information

species Glycine max
transcript GLYMA04G38800.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 15
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAACTTATGTTATTGCACTCTGgtaaatatttcattttttttattagtttttccttgagcttaagttttgttttttctttataa-aaaattatgagtactactttattcatcagattagttcaattcgtatggagtaacaactggtagataattttgtttttgtttttactgtttgttaag
||||||||||||||||||||| ||||| ||||| ||||| || ||||| || ||||||||||| || |||||||| |||||| |||| || || ||| ||||||| |||  | ||| || |||          |||   |||    |   |  |   || |  | ||  ||  || ||    |||| ||  | |     |||  |  |||   | ||   | | ||                                 
GGCAAGGGCTGGATTTTATGAGAAACCCATTGCGACTTTGGACTTTGCTTCGTTGTATCCATCCATCATGATGGCATATAACCTATGCTACTGTACTTTGgtaaaaatt--agtttcttaatt--------tctgattataa----tacctactacatacagcagaaacatttgttctctgatatt-attgggtattcacaaagctcatgt--ttactgtttgaag---------------------------------

upper sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G63960.1 (Arabidopsis thaliana), 5'ss of exon 15
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAACTTATGTTATTGCACTCTGgtaaatatttc-attttttttattagtttttccttgagcttaagttttgttttttcttta---taaaaaattatgagtactactttattcatcagattagttcaattcgtatggagtaacaactggtagataattttgtttttgtttttactgtttgttaag
 |||||  | || || |||||||| |||||||| ||||| |||||||| ||  |||| || || ||||||||||| |||||  | || || |||||  |||||| | |||  || |||| | ||   |||   || |  |||   | | || ||| |  |   ||  || ||  ||| | || ||   |  ||   |   |  |                                                          
AGCAAGAACAGGTTTCTATGAAAAGCCAATTGCAACTTTGGATTTTGCTTCACTGTACCCGTCAATTATGATGGCATATAATCTGTGCTACTGCACCTTGgtaattcttttgatattttcttttcaatttctatttattttatcatctattgtttatacaccttattaatttgggagcattatttccatgttcttgtctttgaag---------------------------------------------------------

upper sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S14_182V6.1 (Physcomitrella patens), 5'ss of exon 15
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAACTTATGTTATTGCACTCTGgtaaatattt-cattttttttattagtttttccttgagcttaagttttgttttttctttataaaaaattatgagtactactttattcatcagattagttcaattcgtatggagtaacaactggtagataattttgtttttgtttttactgtttgttaag
 || |  ||||| | |||||| || |||||||||||  | ||||| |||||  ||||||| || |||||||||||||| ||| | ||||| |||||| ||||||   | | ||| |  |    |  |    | | ||  |  |||| |  |    || |        || |    |   |  |  |||    ||   ||| ||                                                        
TGCCAAAGCTGGGTATTATGACAAGCCAATTGCTACGCTGGATTTCGCATCGCTGTATCCCTCCATTATGATGGCCTACAACCTTTGTTACTGCACTTTGgtaaccttctgcatctagtcgtgttatgcaacttcgacatgcagttgtactgaggctctccg-----ttgtttccatagccattgtcagacaatggcttctatga------------------------------------------------------

upper sequence: GLYMA04G38800.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ15982 (Selaginella moellendorffii), 5'ss of exon 14
GGCAAGGGCTGGATTTTATGAAAAACCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCCTATAACTTATGTTATTGCACTCTGgtaa-atatttcattttttttattagtttttccttgagcttaagttttgttttttctttataaaaaattatgagtactactttattcatcagattagttcaattcgtatggagtaacaactggtagataattttgtttttgtttttactgtttgttaag
 ||||||||||||||||| ||||| |||||||| ||  | |||||||||||  |||| ||||| ||||||||||| || ||  | || ||||||||  |||||   || | ||| || | |||| | || |       |||  ||||| ||                                                                                                            
AGCAAGGGCTGGATTTTACGAAAAGCCAATTGCCACGCTTGATTTTGCATCACTGTACCCATCAATTATGATGGCTTACAATCTTTGCTATTGCACCTTGgtactgtactccatattgtgtatttgattgtggaattactt--gttttattcag---------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525674|gb|BU084485.1|BU084485
EST:     GTTATTGCACTCTG                         GTGATCCCTGAAGATGCTCGCAAGCTCAACATACCTCCAGAGTCTGTGAAC
genomic: GTTATTGCACTCTGgtaaatattt ... gtttgttaagGTGATCCCTGAAGATGCTCGCAAGCTCAACATACCTCCAGAGTCTGTGAAC