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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAgtaagtaactgaggttgcatatttaagagtgtgttatcaattttaagttgttcatttctgtatagtacttaaaaggctttctgttttcaatcctcacttttgcaactaaggtgagttacatttttttttcacag

Basic information

species Glycine max
transcript GLYMA04G37780.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G37780.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM5G872204_T02 (Zea mays), 5'ss of exon 15
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAgtaagtaactgaggttgcatatttaagagtgtgttatcaattttaagttgttcatttctgtatagtacttaaaaggctttctgttttcaatcctcacttttgcaactaaggtgagttacatttttttttcacag
||||      || || ||||||||||| ||||||||||||   ||| ||||||| || ||||| || || ||||| |||||||| || ||||||||||| ||||  |    |  ||  |   ||||   | | | ||  ||  || |||  || |    ||   | || || |  | ||||||  |||| |  |  ||||                                  
TGGTGCTTTGGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACCGAAATCTTGGAGTGCATATATCAAAGgtaaccacgaaaattttaactgttaattctttttaatagatgcta-gtttctcttgatggtcatgcacatagattgatttctgcattcatttatt-ctttga--------------------------------

upper sequence: GLYMA04G37780.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G117329_T01 (Zea mays), 5'ss of exon 1
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAgtaagtaactgaggttgcatatttaagagtgtgttatcaattttaagttgttcatttctgtatagtacttaaaaggctttctgttttcaatcctcacttttgcaactaaggtgagttacatttttttttcacag
||||    | || || ||||||||||| ||||||||||||   ||| ||||||| || ||||| || || ||| | |||||||| || ||||||||||| |||  ||           |  |||||  ||   |  |  |  |  | |  |   | |||  || ||  |  ||     |  || ||||     ||| || | |   ||| ||                      
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACAGAAATCTTGGAGTGCATATATCAAAGgtatcta-------caaaacctttaattgttattcttttaaatggactcttgtttctcttgatggtcatgcaa-----tattgatttctgcattcatttattct-ttaaagtc---------------------

upper sequence: GLYMA04G37780.1 (Glycine max), 5'ss of exon 15
lower sequence: AC226227.2_FGT007 (Zea mays), 5'ss of exon 1
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAgtaagtaactgaggttgcatatttaagagtgtgttatcaattttaagttgttc--atttctgtatagtacttaaaaggctttctgttttcaatcctcacttttgcaactaaggtgagttacatttttttttcacag
||||    | || || ||||||||||| |||||||||||||  ||| ||||||| || ||||| || || |||   |||||||| || ||||||||||| |||  ||    |  ||  |   ||||   | |   ||  | | |   || |    ||     |  | || |||      ||||||  ||||    | | | ||  || |                           
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCACACTTCTATGCATAGAGTGTTCTGGGGTGCACATAAATCTTGGAGTGCATATATCAAAGgtatctacaaaacctttaactgttaattcttttaaatagactcttgtttctcttgatggtcatgcaatattta------tttctgcattca---tttattctttgaagt---------------------------

upper sequence: GLYMA04G37780.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G052235_T02 (Zea mays), 5'ss of exon 4
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAgtaagtaactgaggttgcatatttaagagtgtgttatcaattttaagttg--ttcatttctgtatagtacttaaaaggctttctgttttcaatcctcacttttgcaactaaggtgagttacatttttttttcacag
||||    | || || ||||||||||| ||||||||||||   ||| ||||||| || ||||| || || ||| | |||||||| || ||||||||||| |||  ||    |  ||  |   ||||   | |   ||  | | |   ||   || ||     |  | || |||      ||||||  ||||    | | | ||  || |                           
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTACACAGAAATCTTGGAGTGCATATATCAAAGgtatctacaaaacctttaactgttaattcttttaaatagactcttgtttcccttgatggtcatgcaatattta------tttctgcattca---tttattctttgaagt---------------------------

upper sequence: GLYMA04G37780.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G059994_T01 (Zea mays), 5'ss of exon 9
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAgtaagtaactgaggttgcatatttaagagtgtgttatcaattttaagttg--ttcatttctgtatagtacttaaaaggctttctgttttcaatcctcacttttgcaactaaggtgagttacatttttttttcacag
||||    | || || ||||||||||| ||||||||||||   ||| ||||||| || ||||| || || ||| | |||||||| || ||||||||||| |||  ||    |  ||  |   ||||   | |   ||  | | |   ||   || ||     |  | || |||      ||||||  ||||    | | | ||  || |                           
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACAGAAATCTTGGAGTGCATATATCAAAGgtatctacaaaacctttaactgttaattcttttaaatagactcttgtttcccttgatggtcatgcaatattta------tttctgcattca---tttattctttgaagt---------------------------

upper sequence: GLYMA04G37780.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G090752_T01 (Zea mays), 5'ss of exon 3
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAgtaagtaactgaggttgcatatttaagagtgtgttatcaattttaagttgttc--atttctgtatagtacttaaaaggctttctgttttcaatcctcacttttgcaactaaggtgagttacatttttttttcacag
||||    | || || ||||||||||| ||||||||||||   ||| ||||||| || ||||| || || ||| | |||||||| || ||||||||||  |||  ||    |  ||  |   ||||   | |   ||  | | |   || |    ||     |  | || |||      ||||||  ||||    | | | ||  || |                           
TGGTGCTTCAGAACCTGATTGGGCATCATTAAACCTTGGCGCACTTCTATGCATAGAGTGTTCTGGGGTGCACAGAAATCTTGGAGTGCATATATCAATGgtatctacaaaacctttaactgttaactcttttaaatagactcttgtttctcttgatggtcatgcaatattta------tttctgcattca---tttattctttgaagt---------------------------

upper sequence: GLYMA04G37780.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv17s0000g00310.t01 (Vitis vinifera), 5'ss of exon 15
TGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATATGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTACATATATCAAAAgtaagtaactgaggttgcatatttaagagtgtgttatcaattttaagttgttcatttctgtatagtacttaaaaggctttctgttttcaatcctcacttttgcaactaaggtgagttacatttttttttcacag
||||  |||||| || ||||||||||||||||| || ||  | ||||| ||||| ||||| || ||  ||||||||||||||||||| ||||||||||| |||||| |   |||||    |||   | |    ||| |  |||| | ||||    |    |     ||||    |  |||     |  ||     |     |  | || |                        
TGGTGCACCTGAACCTGATTGGGCATCCTTAAATCTGGGTGTTCTTATCTGCATCGAATGCTCTGGCATTCACCGTAATCTTGGTGTGCATATATCAAAGgtaagttatctaggtt-tgaatt---gggcaccttagctcttttcatttgtaagat----tgatccacttgggtg--ttttaagataaaagaacaagaacaggcattagg------------------------