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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGGTGGCATGATGGAGATTAAAGATCAAGAAATCACTCTTGATGATTTGTATTCTTTGAACCTTAGCAAACTTGATGAATGGAAATGCATTATACCGgtttgttattttttctcaagttgactagctttttacctatacatgcatatgttctataccataggtatcaatcatgaacagtggtatgtagcagctgact...

Basic information

species Glycine max
transcript GLYMA04G36770.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os04g40740.4 (Oryza sativa), 5'ss of exon 8
ATATGGTGGCATGATGGAGATTAAAGATCAAGAAATCACTCTTGATGATTTGTATTCTTTGAACCTTAGCAAACTTGATGAATGGAAATGCATTATACCGgtttgttatttttt--ctcaagttgactagctttttacc-tatacatgcatatgttctataccataggtatcaatcatgaacagtggtatgtagcagctgact-------------------------------------------------
|||||| || ||||||||  | ||||||  |||||| |||||||||||| |||||||  | |||||||||||||| ||||| ||||| || || ||||||||  |||     ||  | |    |   |  | ||||    | ||  ||    |||| | ||    |   |   || |   | | |  | |||      |   |                                                 
ATATGGAGGAATGATGGAATTGAAAGATAGAGAAATTACTCTTGATGATATGTATTCACTTAACCTTAGCAAACTAGATGAGTGGAAGTGTATCATACCGgtcagttgcagattggccccttctttttgccattttgttgtttaactgatagtgttgtttatttcaatcagagataacagaaaattatctgttatcattttttactattcacattggtttctgaacttgccttactcacctttcttatgcag

upper sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G100815_T01 (Zea mays), 5'ss of exon 12
ATATGGTGGCATGATGGAGATTAAAGATCAAGAAATCACTCTTGATGATTTGTATTCTTTGAACCTTAGCAAACTTGATGAATGGAAATGCATTATACCGgtttgtta----ttttttctcaagttgactagctttttacctat--acatg--catatgttctataccataggtatcaatcatgaacagtggtatgtagcagctgact---------------------------------------------------
 ||||| || ||||||||  | ||||||  |||||| |||||||||||| | |||||  | |||||||||||||||||||| ||||| || || ||| | ||  ||||     |   |||    |  || |  || ||| | ||  ||||    |||| |  |  |   ||  || ||  ||   | |      |  ||   |  | |                                                   
GTATGGAGGAATGATGGAAGTGAAAGATAGAGAAATTACTCTTGATGATCTATATTCACTTAACCTTAGCAAACTTGATGAGTGGAAGTGTATCATATCCgtgagttacaaactggatctattttctaccattttattatcaattaacattattatatatatttcaatctaaataccagacaaacaaatgaacttaaagagtcatattacaatcattactgtttgtggagaagtcatcattactatcctttttattcag

upper sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G50310.1 (Arabidopsis thaliana), 5'ss of exon 15
ATATGGTGGCATGATGGAGATTAAAGATCAAGAAATCACTCTTGATGATTTGTATTCTTTGAACCTTAGCAAACTTGATGAATGGAAATGCATTATACCGgtttgttattttt---tctcaagttgactagctttt--tacctatacatgca-tatgttctataccataggtatcaatcatgaacagtggtatgtagcagctgact
||||||||||||||||||||| |||||| ||||| | ||||||||||||||||||||  | || |||||||||||||| || ||||| || || || ||||||||||         |||| | ||  ||  |||||  || |  |  ||  | |||  | || || ||| || ||     ||   |    | |  | |||      
ATATGGTGGCATGATGGAGATAAAAGATAAAGAAGTTACTCTTGATGATTTGTATTCGCTTAATCTTAGCAAACTTGACGAGTGGAAGTGTATCATTCCGgtttgtttgacaccaatctccatttttctgtcttttgatatcagttgataaaatattgtgtagacaataagtttc-----tgggtatgtctttacaacag------

upper sequence: GLYMA04G36770.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv17s0000g10130.t01 (Vitis vinifera), 5'ss of exon 15
ATATGGTGGCATGATGGAGATTAAAGATCAAGAAATCACTCTTGATGATTTGTATTCTTTGAACCTTAGCAAACTTGATGAATGGAAATGCATTATACCGgtttgtt--attttttctcaagttgactagctttt--tacctatacatgcatatgttctataccataggtatcaatcatgaacagtggtatgtagcagctgact-
 ||||| |||||||||||  | || ||||||||||| || ||||||||||||||||   | || || |||||||||||||||||||| ||||| |||||||||||||  ||||  |  |   ||   |   | ||  ||| | | | ||| ||  |   |   | ||  ||  |||| |||||  || |   ||  | |  |   
TTATGGGGGCATGATGGAAGTCAAGGATCAAGAAATTACACTTGATGATTTGTATTGCCTTAATCTCAGCAAACTTGATGAATGGAAGTGCATCATACCGgtttgttgcatttccttcccttttacatgattcttgctacttgtgcttgc-tacttgtcaagtcttaacta--aatcttgaac--tgatcattaagatcaaatgt