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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGAAGCAATAGCATTGGCTGCTGCATCACACATCGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGgtgatctatgttaaatctgattttgagtttatttgacattggcatctatcctggttatgtgttgaaaatttgttaatatatgtccatttgattattttga...

Basic information

species Glycine max
transcript GLYMA04G14730.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G14730.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os06g43790.1 (Oryza sativa), 5'ss of exon 15
TGATGAAGCAATAGCATTGGCTGCTGCATCACACATCGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGgt---gatctatgttaaatctgattttgagtttatttgacattggcatctatcctggttatgtgttgaaaatttgttaatatatgtcca--tttgattattttga---
||||||||| || |   | ||||||||| | || || ||||||||| |||| || |||   |||||  | |  |||||||||||||||||||||| ||||||   || |||| ||   ||     |    || ||    |||         || || ||      ||| ||||| |  |  ||   |||  | |  |   | |||   
TGATGAAGCTATTGAGCTTGCTGCTGCAGCTCATATTGAGAGGGAATTGCAAATCACTAGCTGGAATCTTACCAGCAATTTTGTTGCTTGTACAAACCAGgtactgacctatattctttcaatgatcacattgatccatcat--------gtcttgttttctctgtgacaatttatatacctaaaaccagctattgtcgatgtgaact

upper sequence: GLYMA04G14730.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G343917_T01 (Zea mays), 5'ss of exon 3
TGATGAAGCAATAGCATTGGCTGCTGCATCACACATCGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGgtgatctatgttaaatctgattttgagtttatttgacattggcatctatcctggttatgtgttgaaaatttgttaatatatgtccatttgattattttga--
|||||| || || |   | |||||||||||||| ||||||||||||||||| || |||   |||||  | |  || ||||| || |||||||| |  |||||    ||  ||   ||| || | | ||||   | |  |   ||   |||| |   ||   |  |   ||  | | |||  || ||||     | | |    
TGATGAGGCTATTGAGCTTGCTGCTGCATCACATATCGAGAGGGAACTGCAAATCACTAGCTGGAATCTTACAAGTAATTTCGTCGCTTGTACTAATCAGgtaccttactttttgtctcatatggtgttttactcaagtattcagtaatccggaacatcact--agttttattcagtatcagttcattgatgcactctatgc

upper sequence: GLYMA04G14730.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G32750.1 (Arabidopsis thaliana), 5'ss of exon 15
TGATGAAGCAATAGCATTGGCTGCTGCATCACACATCGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGgtgatctatgttaaatctgattttgagtttatttgacattggcatctatcctggttatgtgttgaaaatttgttaatatatgtccatttgattattttga--
 || ||||| || ||  | |||||||||||||| || ||| ||||  ||||||||||||| |||||| |||| || |||||||||||||||||||  ||||||  |     | | |||   |||| |  |   |    |   || | |    |||| | | |  ||  | |||||  |  |    | ||  | ||    |  
AGACGAAGCTATTGCTCTTGCTGCTGCATCACATATTGAGCGGGAGTTGCAGATTACTCCATGGAACCTGAGCAGTAATTTTGTTGCTTGTACAAATCAGgtgggcatcactta-tctatatttgggagttagtagtttacccagccagtg-ggttttatctgtaatttatgttaggaacttgggagttagtcatcactaat

upper sequence: GLYMA04G14730.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv12s0028g03940.t01 (Vitis vinifera), 5'ss of exon 17
TGATGAAGCAATAGCATTGGCTGCTGCATCACACATCGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGgtgatctatgttaaatctgattttgagtttatttgacattggcatctatcctggttatgt-gttgaaaatttgttaatatatgtccatttgattattttga---
| |||| ||||| || || ||||||||||| ||||| || |||||||||||||| ||||| |||||| | |||||||| |||||||| |||||||  ||||| |  ||  || | |||||| ||  |   | |  | | |   || | | ||| ||| || || |||       || | |  |    | ||   |  |||    
TTATGAGGCAATTGCTTTAGCTGCTGCATCCCACATTGAAAGGGAACTGCAGATAACTCCATGGAACCTAAGTAGCAACTTTGTTGCATGTACAAATCAGgtaaattactttta-tctgatattttga--aatgcagaataatatttctgctgcttaagtcgtggaagggcaaatactgtg-gcaagtgtgtggacattgcttt

upper sequence: GLYMA04G14730.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S255_25V6.1 (Physcomitrella patens), 5'ss of exon 14
TGATGAAGCAATAGCATTGGCTGCTGCATCACACATCGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGgtgatctatgttaaatctgattttgagtttatttgacattggcatc-tatcctggttatgtgttgaaaatt--tgttaatatatgtccatttgattattttga-
 ||||| || ||| |  | || ||||| |||||||| |||||||||||||| || ||||| ||||| ||||||   |||||||||||   |||||  |||||||| |  ||| | ||  || || | | | || ||| |    ||    | ||   ||  ||  |  |  |  ||| |  ||   |  |  | || ||||  | 
AGATGAGGCTATAACTCTAGCAGCTGCTTCACACATTGAGAGGGAACTGCAAATCACTCCCTGGAATTTGAGTTCTAATTTTGTTGCCGCTACAATGCAGgtgattt--gttcagtc--atgttaattattttcgacgtatttatggctttctatatagctgaaggtatctagtgtcatgatgcttttagatcatgatttaaac

upper sequence: GLYMA04G14730.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S95_40V6.1 (Physcomitrella patens), 5'ss of exon 14
TGATGAAGCAATAGCATTGGCTGCTGCATCACACATCGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGgtgatctatgttaaatctgatt--ttgagtttatttgacattggcatctatcctggttatgtgttgaaaatttgttaatatatgtccatttgattattttga
 ||||| || ||| |  | ||||| ||||||||||| |||||||||||||| |||||||| |||||  |||||   |||||||||||   |||||  ||||||||  |  |||       |   ||   |||||||     |||| |  |  |||  ||     |    || |   |  ||    |  |  | ||||  |  
GGATGAGGCGATAACTCTAGCTGCCGCATCACACATTGAGAGGGAACTGCAAATTACTCCATGGAATCTGAGTTCAAATTTTGTTGCCGCTACAATGCAGgtgattgaatttagtctctgtgagttttctttatttctgtatggctttaagtctgtgtagccagtaggcatctaacatcatgcagctttcaggttataat--