1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAGgtaaacattgcatctgattttcctttattcattgccattccttgatcacacatgctaacatttgatttttttttctcttgcag
species | Glycine max |
transcript | GLYMA04G09070.2 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAG GAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTACGGGAGAACAEST: gi|208122360|gb|GD920825.1|GD920825
genomic: AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAGgtaaacattg ... tctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACA
EST: AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAG GAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTACGGGAGAACAEST: gi|193497751|gb|FK462439.1|FK462439
genomic: AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAGgtaaacattg ... tctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACA
EST: AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAG GAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTACGGGAGAACA
genomic: AAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAGgtaaacattg ... tctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACCAAGCTGCTTTTGTTCTTAGTGTCCCAAGAAGAAAACCAGCTGATGAAACTCAGGAGACACTCCGCACATCTGCTTTTCCTGGTACTCATGTCAAGgtaaacattgcatctgattttcctttattcattgccattccttgatcacacatgctaacatttgatttttttttctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA