Sequence
atgc intronic sequence ATGC exonic sequenceGTGCTGGATGCTGATAATGGGCGTCAGTTGGAGAGTTCTACTGGTCGTGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAAgtaagtaccagttgctattcaagttaacttgtttgtctttcaattcgttagccttatctggcccctcaaatttttgtactcatttcatttcattccatttgaagttaaacgcaccctcctgtgtttttgacag
Basic information
species | Glycine max |
transcript | GLYMA03G40210.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 15
GTGCTGGATGCTGATAATGGGCGTCAGTTGGAGAGTTCTACTGGTCGTGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAAgtaagtaccagttgctattcaagttaacttgtttgtctttcaattcgttagccttatctggcccctcaaatttttgtactcatttcatttcattccatttgaagttaaacgcaccctcctgtgtttttgacag
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ATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATAgtgagttttaa--attccttatgtacaacggatagtgt---aaagtgt-----ttagatgcgttttggattggtagtaaatgtttaatttggtggggttgcag------------------------------
upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 16
GTGCTGGATGCTGATAATGGGCGTCAGTTGGAGAGTTCTACTGGTCGTGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAAgtaagtaccagttgctattcaagttaacttgtttgtctttcaattcgttagcctt-atctggcccctcaaatttttgtactcatttcatttcattccatttgaagttaaacgcaccctcctgtgtttttgacag
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ATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTGgtgagtaca---tatttttca--ttagcttgtccagcataggtgttgaaaaacttgagttttcagctcaaact------ccaatctcacatcatcctgttagaggctaata-----------------------
upper sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 15
GTGCTGGATGCTGATAATGGGCGTCAGTTGGAGAGTTCTACTGGTCGTGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAAgtaagtaccagttgctattcaagttaacttgtttgtctttcaattcgttagcctt-atctggcccctcaaatttttgtactcatttcatttcattccatttgaagttaaacgcaccctcctgtgtttttgacag
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ATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTGgtgagtaca---tatttttca--ttagcttgtccagcataggttttgaaaaacttgagttttcagctcaaact------ccaatctcacatcatcctgttagaggctaata-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192315060|gb|FK010430.1|FK010430EST: TGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAA GTGGGCAGATATCCGTTGTGCAAGTTCTTTTGGAAGAACTACCTGATCAGT
genomic: TGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAAgtaagtacca ... tttttgacagGTGGGCAGATATCCGTTGTGCAAGTTCTTTTGGAAGAACTACCTGATCAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCTGGATGCTGATAATGGGCGTCAGTTGGAGAGTTCTACTGGTCGTGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAAgtaagtaccagttgctattcaagttaacttgtttgtctttcaattcgttagccttatctggcccctcaaatttttgtactcatttcatttcattccatttgaagttaaacgcaccctcctgtgtttttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT