Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAAgtgagtgtagatatttctttcatttgtagtctgcttgaatattctgcatgaattttattgatatccatggtttactgcag

Basic information

species Glycine max
transcript GLYMA03G34890.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34890.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv08s0007g03910.t01 (Vitis vinifera), 5'ss of exon 14
GTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAAgtgagtgtagatatttctttc---------atttgtagtctgcttgaatattc--tgcatgaattttattgatatcca-tggtttactgcag--------
||||| || |||||||| |||||||| ||||| |||||||| ||||||||||||||||||||| | || || |||||||| || |||||||| |||||||||  | | |||  ||          | | ||||    | | | || |   |   |  |||| ||| |||   | |  |||| ||  |        
GTTGTAGCAGCTGTTGGTTTTAAGGGCAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTGGCTTCCATAATTGAAGCATGTTGGGCAAAgtgagtgacggtttttgattatacaaaaaaaatagtaggtcccatcactaattgatctttccatttcattaataagaacttttttattgtggtattccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254324293|gb|GR840610.1|GR840610
EST:     CGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAA                         CGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATTCTTTGAAAGT
genomic: CGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAAgtgagtgtag ... tttactgcagCGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATTCTTTGAAAGT
EST: gi|207837228|gb|GD808848.1|GD808848
EST:     CGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAA                         CGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATTACTTTGAAAG
genomic: CGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAAgtgagtgtag ... tttactgcagCGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATT-CTTTGAAAG
EST: gi|254319235|gb|GR830583.1|GR830583
EST:     CGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAA                         CGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATTCTTTGAAAGT
genomic: CGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAAgtgagtgtag ... tttactgcagCGAACCCTGGAAACGCCCTTCTTTTTCAAGTATTATGGATTCTTTGAAAGT