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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAAGTACATCACTTCAAGCACCTTCCTCAAATTCACTTGTTGCATCAGCAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataacagacaattttgcatcagttacacatttctgtactttcttaaaattgagaatcggttcaatttccatagttatagttaatggtataaagttg...

Basic information

species Glycine max
transcript GLYMA03G27460.2
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337485|gb|CO981351.1|CO981351
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|6134767|gb|AW133160.1|AW133160
EST:     AATTACATTTCAGAATTCTGTAGATAAGAAAGATTACATACGAATAAAAG                         GT-GTGAACTTCGGTACCACT
genomic: AATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAA-Ggtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACT
EST: gi|9899023|gb|BE607991.1|BE607991
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAGAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|12496135|gb|BG046912.1|BG046912
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|298166525|gb|HO009964.1|HO009964
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|9899207|gb|BE608105.1|BE608105
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|209697031|gb|BW667021.1|BW667021
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|51335508|gb|CO979374.1|CO979374
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|22929130|gb|BU546269.1|BU546269
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|16104856|gb|BI892596.1|BI892596
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|10710450|gb|BF010168.1|BF010168
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|23734204|gb|BU765335.1|BU765335
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
EST: gi|21256238|gb|BQ453126.1|BQ453126
EST:     CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAG                         GTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA
genomic: CAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataaca ... acatttacagGTTGTGAACTTCGGTACCACTGCCGTGAACCTCAAAATCTCTCTTGACGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTAAGTACATCACTTCAAGCACCTTCCTCAAATTCACTTGTTGCATCAGCAATTACATTTCAAAATTCTGTAGATAAGAAAAATTACATACGAATAAAGgtaaataacagacaattttgcatcagttacacatttctgtactttcttaaaattgagaatcggttcaatttccatagttatagttaatggtataaagttg

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