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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCACCTTGCAGCAACCTTCCTCACGGCTCACAACATTGCACATGGAATCAATTTGAAAAAATCTCCCGTGCTTCAATATTTATATTATTTAGCCCAGgtatgacccttttttcaattgattacttggttgtgagatttgtagtttgctaattttagttgaatgttttttattag

Basic information

species Glycine max
transcript GLYMA03G07460.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G07460.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 15
TGACCACCTTGCAGCAACCTTCCTCACGGCTCACAACATTGCACATGGAATCAATTTGAAAAAATCTCCCGTGCTTCAATATTTATATTATTTAGCCCAGgta----------tgacccttttttcaattgatt-------acttggttgtgagatttgtagtttgctaattttagttgaatgttttttattag
|||||||||||| |||||||| || ||| ||||||| |||||||||||||| ||||||| ||||||||| || ||||| ||| | ||||| ||||| ||||||          |||  || |||| |||  ||        ||||| || |   ||  |||  |   |   | |  ||| |||||  |||    
TGACCACCTTGCTGCAACCTTTCTTACGTCTCACAATATTGCACATGGAATTAATTTGAGAAAATCTCCTGTACTTCAGTATCTGTATTACTTAGCACAGgtaaaaagggagatgatgctgttttgaatatatctacactgacttgattattccata-gtatctgattggctgtgattgcatgttggttacag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017264|gb|CX704006.1|CX704006
EST:     TCAATTTGAAAAAATCTCCCGTGCTTCAATATTTATATTATTTAGCCCAG                         ATTGGGCTGGCAATGTCTCCTTTGAGCAATAACTCCCTATTCTTAGACTAC
genomic: TCAATTTGAAAAAATCTCCCGTGCTTCAATATTTATATTATTTAGCCCAGgtatgaccct ... tttttattagATTGGGCTGGCAATGTCTCCTTTGAGCAATAACTCCCTATTCTTAGACTAC
EST: gi|151401309|gb|EV271123.1|EV271123
EST:     GAAAAAATCTCCCGTGCTTCAATATTTATATTATTTAGCCCAG                         ATTGGGCTGGCAATGTCTCCTTTGAGCAATAACTCCCTATTCTTAGACTAC
genomic: GAAAAAATCTCCCGTGCTTCAATATTTATATTATTTAGCCCAGgtatgaccct ... tttttattagATTGGGCTGGCAATGTCTCCTTTGAGCAATAACTCCCTATTCTTAGACTAC