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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaattatgatgaatattaatatgatattttttttcatgatcattgatttagtactgaatggttcttgaaattattgttattttcattttggttactttctgctcag

Basic information

species Glycine max
transcript GLYMA02G42560.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 15
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgt-tgattatatgttgtgattaagcaattatgatgaatattaatatgatattttttttcatgatcattgatttagtactgaatggttcttgaaattattgttattttcattttggttactttctgctcag
|| ||||| || |||||  | |||||||| ||||||||||| ||  | |||||||||||||| || |||||||||||||| |||||||| |  || ||  |  |    | |||     | |   || ||   |    ||||||  |||||      ||| |||  ||  | |   |    |  ||    |||||      |                
GGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAGgtatccttttaattcatttcaatgcatagtcggtatgtaatacctttgc-ttttttaccatga-----aattcagttgtgtcttgcctt----accatgcccattttttaacag----------------

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 13
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaa-ttatgatgaatatta--atatgatattttttttcat-----gatcattgatttagtactga-atggttcttgaaattattgttattttcattttgg-ttactttctgct-cag
|| ||||| || |||||||| |||||||| ||||||||||||||| | ||||| || |||||||| || ||||||||||| ||||||||   || | | || | |  |   || || |  |   || ||  |||| | ||| ||| |  |      |   |  ||  ||| ||   |   |||   |  | |||    ||||   ||||| |||| |||| |  |||
GGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAGgtatcttttgtattattagcatataaattcttttctgtagtagtatataaaattctttgttgtctgggaactctccatgcagttcttttagtcttcactatgtaatttggttttttgctttggcttacattcttcaacag

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 15
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 15
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgatta-tatgttgtgattaagcaattatgatgaatattaatatgatattttttttcatgatcattgatttagtactgaatggttcttgaaattattgt-tattttcattttggttactttctgctcag
|| || || ||||||||||||||||||||||||||||| ||||||   |||||||| |||||||| || |||||||| ||||||||||| | | | ||| || ||  || |||   ||  |      | || |  |  || |  || |    |  || || |||   | | | | |  |||||||  | |  ||   | |   ||  |   |  ||||
GGAGCAGTAAATTTTGCATTAATGATGTCTCAAATGGAAGGAGGTTCTCCAGTTGACTACAACACCATCACTGATCTTTTTCTTCAGgtaggtcaatatattctg--tatgcaccaatatttgtagctcat-tacttgttctactcctatatacagaatt-gtatacagtagatgt--aaattatcatgtgcttatttgtctatttgtgcatattcag

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 15
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 15
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaattatgatgaatattaatatgatattttttttcatgatcattgatttagtactgaatggttcttgaaattattgttattttcattttggttactttctgctcag
|| || || |||||||| ||||||||||| |||||||| |||||| | |||||||| |||||||| || |||||||| || ||||||||     | | ||        || |  ||   || | || || ||  ||| |  || | || |     |   ||   | |   | |  || | ||| | ||   |  |||  |                
GGAGCAGTAAATTTTGCTTTAATGATGTCCCAAATGGAAGGAGGTTGTCCAGTTGACTACAACACTATCACTGATCTTTTCCTTCAGgtga---acacgt--------agaatatactgtgtacat-aaaattgtatctcattacttgtttcacaagagagctatcatgtgctaatgtacttacttttgcat--attcag----------------

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 15
GGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAGgttgattatatgttgtgattaagcaattatgatgaatattaatatgatattttttttcatgatcattgatttagtactgaatggttcttgaaattattgttattttcattttggttactttctgctcag
|| ||||| ||||||||  |||||||||||||||||||||||||| | ||  ||||||  || || ||||||||||||||||||||||||  |||| ||             | |        |||||||   |||| |  | |||| |||| |||| |   | |   ||||     |  || |   | |   ||                     
GGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatgtg-------------actgctgcctctattaattgaatatataatatcataatcactgatcttacattttttggtaaccaatcttgtatctttccacaccgca----------------