1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatattgtttgcattttatttgtaatcaatctattgcattaaggttgttgatttattatgtaattcccttctggttgaatag
species | Glycine max |
transcript | GLYMA02G41850.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGEST: gi|208073189|gb|GD869878.1|GD869878
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGEST: gi|254315842|gb|GR825651.1|GR825651
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGEST: gi|192322275|gb|FK014516.1|FK014516
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAGGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGEST: gi|193309058|gb|FK275782.1|FK275782
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGEST: gi|254315128|gb|GR830121.1|GR830121
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGEST: gi|6848973|gb|AW351263.1|AW351263
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGEST: gi|193382835|gb|FK347712.1|FK347712
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGEST: gi|254315841|gb|GR825650.1|GR825650
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAGEST: gi|14992061|gb|BI317734.1|BI317734
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTATGAGTTGAGEST: gi|4395663|gb|AI494660.1|AI494660
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
EST: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAG GTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
genomic: ATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatatt ... ggttgaatagGTTGGAATTAGTACGAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTGCTGTTTTTCACAATGCAAGCACCAGATTCAGTGATGGGGCAAGATTTGGACTAGGCGCAGAGgtataatattgtttgcattttatttgtaatcaatctattgcattaaggttgttgatttattatgtaattcccttctggttgaatag
- - - - - - - - - - - - - - - - - - - - - GCAAGA