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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctatgtcacttgaatgttactttctgaattactttttttagatgcttgatttggctgctgtccctcattataaaactttgaaaacacaatgat...

Basic information

species Glycine max
transcript GLYMA02G14210.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os02g02750.1 (Oryza sativa), 5'ss of exon 14
GGAAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctatgtcacttgaat------gttactttctgaattactttttttagatgct------tgatttggctgctgtccctcattataaaactttgaaaacacaatgat--
|| || |||||| |||| |||||||||||||| || || |||||||| || ||||||||||||||    ||    |||| |   |      |||   || |  |  || |||| ||  |  |      ||||  |  |    |   | || || |||| |||      |  |     
GGCAGAATGATTCTGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATGgttgttgcctaatcacctttgttctttggttttgttttccaccaccttttataagtaatatatgatgatacgcatatattttgttatgattaaacattgtgcctccctttgcag

upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os06g10280.1 (Oryza sativa), 5'ss of exon 14
GGAAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagc-tatgtcac--ttgaatgttactttctgaattactttttttagatgcttgatttggctgctgtccctcattataaaactttgaaaacacaatgat
|||||||||||  | || || |||||||||||||| || ||||| |||||||| |||||||||||||   | ||   ||   ||  ||||    ||   |  | |   |      | | ||| |    ||  ||     |  | | | || | |   ||       
GGAAGGATGATACTTGCTCATTTATGTGATGAACCCAAAGGTCTCAAAACTGGAATGTGCATGgtatgtccatactccatagttccatgtcttgtttctatctgcacatcacgtgtacatgagtcacttgaagtaaaataccaaatatctcttatttcag------

upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
GGAAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctatgtcacttgaatgttactttctgaattactttttttagatgcttgatttggctgctgtccctcattataaaactttgaaaacacaatgat--
||||| |||||| |||| ||||| ||||||||||| |||||| ||||||| |||||||||||||||   |||  |  |    |||  | ||||     ||  |||||  |    | | ||||      || || | | || ||||   |    |  |    |   
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaatcattcttt----gttcttttttacaccgtcctcattta-----tgacctt-actaaaaaatcgtatttatccttctacag

upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G466281_T03 (Zea mays), 5'ss of exon 1
-------------------------------------GGAAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctatgtcacttgaatgttactttctgaattactttttttagatgcttgatttggctgctgtccctcattataaaactttgaaaacacaatgat--
                                     ||||| |||||| |||| ||||| ||||||||||| |||||| ||||||| |||||||||||||||   |||  |  |    |||  | ||||     ||  |||||  |    | | ||||      || || | | || ||||   |    |  |    |   
TGAACATTACTTTACATCTGCTTATATTGCTCCACAGGGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaatcattcttt----gttcttttttacaccgtcctcattta-----tgacctt-actaaaaaatcgtatttatccttctacag

upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv01s0010g00950.t01 (Vitis vinifera), 5'ss of exon 15
GGAAGGATGATTTTGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagctatgtcacttgaatgttactttctgaattactttttttagatgcttgatttggctgctgtccctcattataaaactttgaaaacacaatgat---
|||||||||||| |||||||||| ||||||||||| |||||  |||||||||| |||||||||||||    |||   |     |    | ||  ||| |||  |      |  |  |   |    | |  ||||||        ||        | |     |   
GGAAGGATGATTCTGGCACACTTGTGTGATGAACCCAAGGGCTTGAAAACTGGAATGTGCATGgtatgttgtattctaaccagac---aattattgagttatctgccactgtggtctctctcttttcccctccctctggcccccacacgcgccccccccctttccc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7028778|gb|AW458561.1|AW458561
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagcta ... tgttttacagTCCCTCATGTTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTA
EST: gi|15286735|gb|BI470626.1|BI470626
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagcta ... tgttttacagTCCCTCATGTTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTA
EST: gi|10252639|gb|BE820405.1|BE820405
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagcta ... tgttttacagTCCCTCATGTTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTA
EST: gi|16995635|gb|BM085007.1|BM085007
EST:     TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATG                         TCCCTCATGTTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTA
genomic: TGGCACACTTATGTGATGAACCTAAGGGTCTGAAAACTGGGATGTGCATGgtataagcta ... tgttttacagTCCCTCATGTTTCTCCCATTGGCCATTGCAAATGTACTTGCATCCAGGCTA