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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGgtagaataagataccaaagtttcaactactgttagaattcttgaaataatcgccacaggtttgcaatgtctccaccaaccaacttgagcttattcttcttgcag

Basic information

species Glycine max
transcript GLYMA02G10590.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10590.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv13s0019g00010.t01 (Vitis vinifera), 5'ss of exon 16
CTGTGACCTACATAGATTCTAGTGCTGTTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGgtagaata---agataccaaagt------ttcaactactgttagaattcttgaaataatcgcca--caggtttgcaatgtctccaccaaccaacttgagcttattcttcttgcag
|||| || ||  |||| || ||||| ||||| |||||||| ||||||||||| |||||||||| |||||| || ||||| |||     |   | |  |||      ||||| || | |  |   | || |||| |  |     ||    |  |||||     || |||   ||| |     ||   ||| ||
CTGTTACATATGTAGACTCCAGTGCCGTTCAAGCTTTGAAGGACTTGTATCACGAGTACAAATCACGGGATATCCAGgttgaaagcccattcaacgcagtgtgcaattcaaatattttacggtctatttaaatcactgaagatcataactataatgtactttcccacct-tttgtg-----tcactttgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5760288|gb|AI965651.1|AI965651
EST:     TTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAG                         ATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCC
genomic: TTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGgtagaataag ... cttcttgcagATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCC
EST: gi|26047758|gb|CA784450.1|CA784450
EST:     ATTACGGGACATTCAG                         ATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCC
genomic: ATTACGGGACATTCAGgtagaataag ... cttcttgcagATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCC
EST: gi|254333564|gb|GR848482.1|GR848482
EST:     TTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAG                         ATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCC
genomic: TTCAGGCTTTGAAAGACTTGTATCAGGAGTACAAATTACGGGACATTCAGgtagaataag ... cttcttgcagATTGCAATATCCAATCCAAGTCCAGAAGTTCTGCTTACCTTGTCTAGATCC