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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACAGGCTCCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtacgcagactttttgggtactgattagtattactctcatttagttatgtaagcttacattcattattttctgcag

Basic information

species Glycine max
transcript GLYMA02G07830.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 14
AGTACAGGCTCCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtac-gcagactttttg----ggtactgattagtatt-actctcatttagttat-------gtaagcttacattcattattttctgcag
||||||||| || ||||| ||||||||||| || |||||  |  | ||| ||||    | ||||||||| |||||||||||||||||||||||||| ||||||  |    |||| ||      | ||   |||| || ||  | || | |||||        ||  || |    ||||| |||||| ||
AGTACAGGCACCCATTGTCAATAATCCTGCCTTCTGGGAACGGCTGGGTCTTGATACTTTTGGCACTGACACCCTGTTCTTTGCATTTTACTATCAGCAGgtattgttagctttctgtaacaatccttcatagtgtttaccattatgtggttatcttgagcatattctcaagcgcattactttctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7590888|gb|AW706631.1|AW706631
EST:     TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtacgcagac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
EST: gi|208230983|gb|GE033102.1|GE033102
EST:     TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTACCAA
genomic: TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtacgcagac ... ttttctgcagAACACTTACCAA
EST: gi|193602394|gb|FK556291.1|FK556291
EST:     TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTACCAACAGTATATGG
genomic: TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtacgcagac ... ttttctgcagAACACTTACCAACAGTATATGG
EST: gi|254336764|gb|GR842943.1|GR842943
EST:     TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtacgcagac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
EST: gi|13481733|gb|BG511076.1|BG511076
EST:     TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAG                         AACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG
genomic: TTGAACAATATGGCACTGATACCCTGTTCTTTGCATTTTACTATCAACAGgtacgcagac ... ttttctgcagAACACTTACCAACAGTATATGGCTGCAAAAGAGCTAAAGAAGCAGTCTTGG