1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
ATTTTTTGTCTCTTCAACACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAGgtcaggatttttctctttcacttgcaagttgcaagcataagatagttcttcatagcttatatcacatacatcttaaatatctgtaatgttaaccttttgcag
species | Glycine max |
transcript | GLYMA02G05950.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: TTACAAGACAAAAGTGGCCCGCCAG CGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAGEST: gi|192329023|gb|FK021405.1|FK021405
genomic: TTACAAGACAAAAGTGGAACGCCAGgtcaggattt ... ccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
EST: CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAG CGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAGEST: gi|6846005|gb|AW348295.1|AW348295
genomic: CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAGgtcaggattt ... ccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
EST: CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAG CGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAGEST: gi|58020577|gb|CX707319.1|CX707319
genomic: CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAGgtcaggattt ... ccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
EST: CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAG CGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
genomic: CACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAGgtcaggattt ... ccttttgcagCGTGGAATTGATGCATTGCCTGGCATGACAATTCTTTCTGCGTGCTTAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTTTTGTCTCTTCAACACTCTTTTGTTGTGGAGGGTTCATTTACAAGACAAAAGTGGAACGCCAGgtcaggatttttctctttcacttgcaagttgcaagcataagatagttcttcatagcttatatcacatacatcttaaatatctgtaatgttaaccttttgcag
- - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA