1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
CCCTTTTGGAAAGTAGTTGCTGATGGTTCATCAAAAGGGCGTTGTGTTGTTGgtatatttttatttttcttcgctgttgcattttctctgcatagaagagtatacatcactctaagtaaaatatacttagagtaatgtatactcttatactgcatatccttactccaaaattcccaggtttttaaatttactggtacatatttag
species | Glycine max |
transcript | GLYMA02G05800.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTTTTGGAAAGTAGTTGCTGATGGTTCATCAAAAGGGCGTTGTGTTGTTG GGGTTCTTGAAGCCAATEST: gi|208306503|gb|GE110014.1|GE110014
genomic: CTTTTGGAAAGTAGTTGCTGATGGTTCATCAAAAGGGCGTTGTGTTGTTGgtatattttt ... acatatttagGGGTTCTTGAAGCCAAT
EST: CTTTTGGAAAGTAGTAGCTGATGGTTCTTCAAAAGGGCGTTGTGTTGTTG GGGTTCTTGAAGCCAATTTCATAGAACCAGCGCATGACAAGCAGGEST: gi|207695035|gb|GD677118.1|GD677118
genomic: CTTTTGGAAAGTAGTTGCTGATGGTTCATCAAAAGGGCGTTGTGTTGTTGgtatattttt ... acatatttagGGGTTCTTGAAGCCAATTTTATAGAACCAGCGCATGACAAGCAGG
EST: TTCATCAAAAGGGCGTTGTGTTGTTG GGGTTCTTGAAGCCAATTTTATAGAACCAGCGCATGACAAGCAGGATTTTGEST: gi|17024094|gb|BM095128.1|BM095128
genomic: TTCATCAAAAGGGCGTTGTGTTGTTGgtatattttt ... acatatttagGGGTTCTTGAAGCCAATTTTATAGAACCAGCGCATGACAAGCAGGATTTTG
EST: CTTTTGGAAAGTAGTTGCTGATGGTTCATCAAAAGGGCGTTGTGTTGTTG GGGTTCTTGAAGCCAATTTTATAGAACCAGCGCATGACAAGCAGGATTTTG
genomic: CTTTTGGAAAGTAGTTGCTGATGGTTCATCAAAAGGGCGTTGTGTTGTTGgtatattttt ... acatatttagGGGTTCTTGAAGCCAATTTTATAGAACCAGCGCATGACAAGCAGGATTTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTTTTGGAAAGTAGTTGCTGATGGTTCATCAAAAGGGCGTTGTGTTGTTGgtatatttttatttttcttcgctgttgcattttctctgcatagaagagtatacatcactctaagtaaaatatacttagagtaatgtatactcttatactgcatatccttactccaaaattcccaggtttttaaatttactggtacatatttag
- - - - - - - - - GCTGAT