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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAACCAGGAAACCCACAAACAACAGTTATCCAGGCTACTTTTATGAATTTGTCCTCCAATTCATATACAGATTTTGTTTTTCAAGCAGCAGTTCCTAAGgtatgccaatcagtatgttattaagctttttgcatgcagtgctaagatcatcatcattattgtaattataaagatataatttgaatttactgcttttaac...

Basic information

species Glycine max
transcript GLYMA02G03800.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os02g56110.1 (Oryza sativa), 5'ss of exon 18
ACAACCAGGAAACCCACAAACAACAGTTATCCAGGCTACTTTTATGAATTTGTCCTCCAATTCATATACAGATTTTGTTTTTCAAGCAGCAGTTCCTAAGgtatgccaatcagtatgttattaagctttttgcatgca-gtgctaagatcatcatcattattgtaattataaagatataatttgaatttactgcttttaac
 || || |  || |||||    ||     |||| ||||||||||  |||||| | |||| ||| ||||| |||||||||||||| ||||| ||||| ||||||     ||       ||||  |   | ||  ||    | |||    | |    ||||| ||| ||   |   |  |  |   |  | |||      | |
GCAGCCTGAGAAACCACACGAGACTACCGTCCATGCTACTTTTACAAATTTGACATCCAGTTCTTATACGGATTTTGTTTTTCAGGCAGCTGTTCCAAAGgtagcatcatggcgcctttatctattgtcttctatatttgagctgtccttacttgcattagtgttatggcatgcaagttctcaaatctcact-tgacgagc

upper sequence: GLYMA02G03800.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S211_68V6.1 (Physcomitrella patens), 5'ss of exon 16
ACAACCAGGAAACCCACAAACAACAGTTATCCAGGCTACTTTTATGAATTTGTCCTCCAATTCATATACAGATTTTGTTTTTCAAGCAGCAGTTCCTAAGgtatgccaatcagtatgttatta-agctttttgcatgcagtgctaagatcatcatcatta-ttgtaattataaagata-taatttgaatttactgcttttaac
|| ||| ||    || ||||  || || ||  | ||    |  |  || ||||| || |||      ||||||||||| ||||||||||||||||| ||||| |     | | | | ||  || |  ||  | | ||   |  |    |   | || ||| || |  ||| || |  | |  | | ||| |  |  || |   
ACCACCTGGGTCTCCTCAAATGACTGTGATTAAAGCCTGCTACAGTAACTTGTCATCAAATCTTCTCACAGATTTTGTCTTTCAAGCAGCAGTTCCAAAGgtcttaatttgaatcttttgctataagttgattcttgtttttattgttttcacttctttacttttgtttacaacgtcaattttctaaatctgattattat---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021820|gb|CX708561.1|CX708561
EST:     TGTCCTCCAATTCATATACAGATTTTGTTTTTCAAGCAGCAGTTCCTAAG                         TTTCTTCAATTGCACTTAGATCCAGCTAGCAGCAATACTCTTCCCGCAAAT
genomic: TGTCCTCCAATTCATATACAGATTTTGTTTTTCAAGCAGCAGTTCCTAAGgtatgccaat ... tgactttcagTTTCTTCAATTGCACTTAGATCCAGCTAGCAGCAATACTCTTCCCGCAAAT
EST: gi|21888840|gb|BQ742053.1|BQ742053
EST:     TGTCCTCCAATTCATATACAGATTTTGTTTTTCATGCAGCAGTTCCTAAG                         TTTCTTCAATTGCACTTAGATCCAGCTAGCAGCAATACTCTTCCCGCAAAT
genomic: TGTCCTCCAATTCATATACAGATTTTGTTTTTCAAGCAGCAGTTCCTAAGgtatgccaat ... tgactttcagTTTCTTCAATTGCACTTAGATCCAGCTAGCAGCAATACTCTTCCCGCAAAT