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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactgttcagctagatttgcattcacttgattcagttttgaataacttttcagctgatggttggatgaatctggttgcctgcag

Basic information

species Glycine max
transcript GLYMA02G03750.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03750.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G17960.1 (Arabidopsis thaliana), 5'ss of exon 8
TTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactgttcagctagatttgcatt----cacttgattcagttttgaataacttttcagctgatggttggatgaatctggttgcctgcag
 | || ||||| || |||||||| ||||| |||||||||||||| |  || ||||||||   |  |||||||||||||||||| ||| | |||||| |  ||    | ||   |||   ||    | ||   ||  ||| |  ||  |||   |   |||  |       || || ||     |||
ATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGgttag-gctcccaaactctttttagttttttcctctgttttttgttcttgatctcttacaataagattttgatccttatttgcttcgtaccag

upper sequence: GLYMA02G03750.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 16
TTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactgttcagctagatttgcattcacttg---attcagttttg-----aataacttttcagctgatggttggatgaatctggttgcctgcag----
||||| ||||| ||||||||||| ||||| ||||||||||||||||  || ||||||||| ||  |||||||||||||||||| ||||| ||||||   |||    |  |   |||   ||  ||||   || || || |        || |  | |||  | || ||  |||  ||| || ||||  |     
TTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgtt-atactcccaaattctttttagtttttcttgtctatgcatttctcttgctgttatcagtgcaggagttgattttatgtttcttgtggcctcaaatcag

upper sequence: GLYMA02G03750.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 16
TTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactgttcagctagatttgcattcacttgattcagttttgaataacttttcagctgatg-gttggatgaa--tctggttgcctgcag------------
 | ||||||||||||||||| || |||||||||||||||||||| ||||| |||||||||||  |||||||||||||||||||||| || |||||||    ||||||  |    |||  |||| |   |   ||  || |  |||| |    |  || |  | || |   | |  |||   |               
ATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTTTCTGATGCATTAAGTAGGAAATTCCAGTGTGCAACATTACAGgtttatcatgttcacttgctcttg--ttcattctttcgtgtgctgcaacacttgtgctttcttgtgcagaattaggttttaattgttggataatgtgcttgcag

upper sequence: GLYMA02G03750.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv19s0015g00470.t01 (Vitis vinifera), 5'ss of exon 16
TTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactgttcagctagatttgcattcacttgattcagttttgaataacttttcagctgatggttggatgaatctggttgcctgcag------------------
 | ||||||||||| |||||||| |||||||||||||| ||||| ||||| |||||||||||   ||||||||||||||||||||| || |||||||    |||| |  |   |||   || | |   || ||| |      ||||||   ||  | | ||   ||||  ||||      ||                  
ATAAATGAAGGGGACGGTGCATTTTATGGACCAAAGATTGACATTAGTGTTTCTGATGCATTAAATAGGAAATTCCAGTGTGCAACATTACAGgtttatcatgttaacttgctttt---tttattc--tttagtgtgctgctacttttgtactttttggtgcg-gaattaggttttaattagtggataatgtggttgcag

upper sequence: GLYMA02G03750.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S400_36V6.1 (Physcomitrella patens), 5'ss of exon 16
TTGAATGAAGGGGATGGTGCATTCTATGGACCAAAGATAGACATCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactgttcagctagatttgcattcacttgattcagttttga-ataacttttcagctgatggttggatgaatctggttgcctgcag--------------
 | ||||||| ||||||||| || |||||||||||||| |||||||  || | ||||||||||   || || || |||||||| ||  | |||||  | |  | | |  |    ||||||| | |  ||    |  ||  || |   || | || |    | | |  || |  |    | ||               
ATTAATGAAGCGGATGGTGCCTTTTATGGACCAAAGATTGACATCACCGTTTTTGATGCATTGAAGAGAAAGTTTCAGTGTGCTACAATCCAGgtgggtag-gctaaattg---ttgcatttattgaataatctcatgttattatggttgatcttagaaattgttagatttcatcagttacaactccgtcatttcta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9900873|gb|BE609841.1|BE609841
EST:     TCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAG                         CTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
genomic: TCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactg ... ttgcctgcagCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
EST: gi|6341579|gb|AW164403.1|AW164403
EST:     TCAGGGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAG                         CTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
genomic: TCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactg ... ttgcctgcagCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
EST: gi|13478764|gb|BG508107.1|BG508107
EST:     TCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAG                         CTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
genomic: TCAGTGTATCTGATGCATTGGGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcactg ... ttgcctgcagCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT