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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTAATGCTTGTCACATCCTTAAACCCGgtaagtgtcctcttgtcttctccggtaacttgctaattttcacatattttttaaacggaattgaatttgcctgtttcag

Basic information

species Glycine max
transcript GLYMA02G01920.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310777|gb|FK000291.1|FK000291
EST:     TCACTAATGCTTGTCACATCCTTAAACCCG                         AAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAG
genomic: TCACTAATGCTTGTCACATCCTTAAACCCGgtaagtgtcc ... cctgtttcagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAG
EST: gi|193666295|gb|FK611808.1|FK611808
EST:     TCACTAATGCTTGTCACATCCTTAAACCCG                         AAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAG
genomic: TCACTAATGCTTGTCACATCCTTAAACCCGgtaagtgtcc ... cctgtttcagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAG
EST: gi|192310922|gb|FG998898.1|FG998898
EST:     TCACTAATGCTTGTCACATCCTTAAACCCG                         AAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAG
genomic: TCACTAATGCTTGTCACATCCTTAAACCCGgtaagtgtcc ... cctgtttcagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAG
EST: gi|209717304|gb|BW659019.1|BW659019
EST:     TCACTAATGCTTGTCACATCCTTAAACCCG                         AAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAG
genomic: TCACTAATGCTTGTCACATCCTTAAACCCGgtaagtgtcc ... cctgtttcagAAAATTGGTTATGACAAGGCAGCAGCAGTTGCCAAGACAGCCCACAAAGAG