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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttcta...

Basic information

species Glycine max
transcript GLYMA02G01060.3
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 5'ss of exon 13
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttatctttcc-ttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttcta
||  |   ||| |||||||| ||||||||||| ||||| ||||||||||| ||  ||||||||||||||||  | |  |  ||    | || ||||  |   | ||  ||  |      |   |     |  |     |  |   |   |||||   |         || 
GTCATTTCAGCAGGTGGACTTCATGTAGTAGGAACAGAACGTCATGAATCTCGCAGAATTGATAATCAGgtaatatactgattgagctatcattgtttgcaagcaaattgcaagattctgcctttgacacaagctctttccgtattttgcatatgatcatggtcaaact-

upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM5G880102_T01 (Zea mays), 5'ss of exon 3
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgt--ttttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttcta
||  |   ||  ||||| || || |||||||| |||||||| |||||||||||  ||||||| ||||||||  | |  |||     || || ||  ||   |    ||||| |||  |  | | |  |  ||  | ||        |  |    |    |   ||   |||
GTCATTACAGTAGGTGGGCTTCACGTAGTAGGAACAGAGCGCCATGAATCACGCAGAATTGACAATCAGgtaatatactattgaagctattgctgttaatat--gcaggtgtgaacacaaggtatcttttctgcttgctgcatgggtgaattgctagtttgtgctaaacta

upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 15
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccaca-tatctcctaccctcttc-ta---
|| ||||||||||||||||| || || || || |||||||| ||||||||||||||||| || ||||||||||  |||       | || |  | ||  ||      |||        | |    |     |||   |    | ||  || ||| |  |   | | || ||   
GTGGTGGAAGCTGGTGGACTTCACGTGGTGGGGACAGAGCGGCATGAATCACGTCGAATAGACAATCAGgtttccttaatagatttgtttcaaggagattta-----tggttgattcaggttcctttctcagtgaaataaatcttcttcactatgttttgttcccctcatacag

upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 15
lower sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 15
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgttt---ttttatctttccttttccttgtagggttgaaaggtgggaagccggga------tgtaatggcttgtggccttggacatccacatatctcctaccctct-tcta-----
||||||  ||| |||||||| ||||| || || ||||| || |||||||| ||||||||||| ||||||||     ||| || |||  ||||  || |||  |||||  |  ||| |   | |      | ||||      |    ||   ||||    | | |   | |||   |||      
GTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAGgtgaaagtttcatttttatttttattt-tagatttgaagtggtggatgtgagtaaaatcctataattttactttagttttctcatctgtgtgtgtgtaatccttcatctgtacag

upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 15
lower sequence: EFJ15249 (Selaginella moellendorffii), 5'ss of exon 14
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttcta
||||| |  || ||||| || || ||  ||||||||||||| |||||||||||  |||||||||||||||| |  | | |||   | |||  ||||       || |    |  |   | |  |                                             
GTTGTTGCTGCAGGTGGCCTTCACGTGATAGGCACAGAGCGCCATGAATCACGAAGAATTGATAATCAGgtatagtaaccttggatgttctctgtat------aacgccccatcctttgttacag--------------------------------------------

upper sequence: GLYMA02G01060.2 (Glycine max), 5'ss of exon 15
lower sequence: EFJ08380 (Selaginella moellendorffii), 5'ss of exon 14
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttcta
||||| |  || ||||| || || ||  ||||||||||||| || ||||||||  |||||||||||||||| |  | | |||   | |||  || |       || |    |  |   | |  |                                             
GTTGTTGCTGCAGGTGGCCTTCACGTGATAGGCACAGAGCGCCACGAATCACGAAGAATTGATAATCAGgtatagtaaccttagatgttctctgcat------aacgccccatcctttgttacag--------------------------------------------