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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttctattattcttgcagctataatagctactgctacttctaccactcctaccctgtcaaataagtatttaaagttggaactttttttcatcatccataaag

Basic information

species Glycine max
transcript GLYMA02G01060.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01060.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os01g21820.1 (Oryza sativa), 5'ss of exon 13
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttatctttcc-ttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttctat-tattcttgcagctataatagctactgctacttctaccactcctaccctgtcaaataagtatttaaagttggaactttttttcatcatccataaag
||  |   ||| |||||||| ||||||||||| ||||| ||||||||||| ||  ||||||||||||||||  | |  |  ||    | || ||||    ||| |||         |    || ||  | || || | |||      |||| | ||| | || | || |   |||  |    |  | | |                                                                             
GTCATTTCAGCAGGTGGACTTCATGTAGTAGGAACAGAACGTCATGAATCTCGCAGAATTGATAATCAGgtaatatactgattgagctatcattgt----ttgcaag---------caaattgcaa--gattctgcctttga-----caca-agctctttccgtattttgcatatgatcatggtcaaact-----------------------------------------------------------------------------

upper sequence: GLYMA02G01060.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM5G880102_T01 (Zea mays), 5'ss of exon 3
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgt--ttttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttctattattcttgcagctataatagctactgctacttctaccactcctaccctgtcaaataagtatttaaagttggaactttttttcatcatccataaag
||  |   ||  ||||| || || |||||||| |||||||| |||||||||||  ||||||| ||||||||  | |  |||     || || ||  ||   |    ||||| |||  |  | | |  |  ||  | ||        |  |    |    |   ||   |||                                                                                                
GTCATTACAGTAGGTGGGCTTCACGTAGTAGGAACAGAGCGCCATGAATCACGCAGAATTGACAATCAGgtaatatactattgaagctattgctgttaatat--gcaggtgtgaacacaaggtatcttttctgcttgctgcatgggtgaattgctagtttgtgctaaacta------------------------------------------------------------------------------------------------

upper sequence: GLYMA02G01060.1 (Glycine max), 5'ss of exon 15
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 14
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccaca-tatctcctaccctcttctattattcttgcagctataatagctactgctacttctaccactcctaccctgtcaaataagtatttaaagttggaactttttttcatcatccataaag
|| ||||||||||||||||| || || || || |||||||| ||||||||||||||||| || ||||||||||  |||       | || |  | ||  ||      |||        | |    |     |||   |    | ||  || ||| |  |   | | ||    |                                                                                             
GTGGTGGAAGCTGGTGGACTTCACGTGGTGGGGACAGAGCGGCATGAATCACGTCGAATAGACAATCAGgtttccttaatagatttgtttcaaggagattta-----tggttgattcaggttcctttctcagtgaaataaatcttcttcactatgttttgttcccctcatacag--------------------------------------------------------------------------------------------

upper sequence: GLYMA02G01060.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 15
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgttt---ttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttctattattcttgcagctataatagctactgctacttctaccactcctaccctgtcaaataagtatttaaagttggaactttttttcatcatccataaag
||||||  ||| |||||||| ||||| || || ||||| || |||||||| ||||||||||| ||||||||     ||| || |||  ||||  || |||  |||||  |  ||| |       ||||   | | |    ||     |  |  | |||| |       | | | || ||| || || ||  ||                                                                           
GTTGTGTCAGCAGGTGGACTTCATGTGGTGGGGACAGAACGGCATGAATCTCGTCGAATTGACAATCAGgtgaaagtttcatttttatttttattt-tagatttgaagtggtggatgt----gagtaaaatcctataattttac---tttagttttctcatctgtgtgtgtgtaatcctt-catctgta-cag---------------------------------------------------------------------------

upper sequence: GLYMA02G01060.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ15249 (Selaginella moellendorffii), 5'ss of exon 14
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttctattattcttgcagctataatagctactgctacttctaccactcctaccctgtcaaataagtatttaaagttggaactttttttcatcatccataaag
||||| |  || ||||| || || ||  ||||||||||||| |||||||||||  |||||||||||||||| |  | | |||   | |||  ||||       || |    |  |   | |  |                                                                                                                                             
GTTGTTGCTGCAGGTGGCCTTCACGTGATAGGCACAGAGCGCCATGAATCACGAAGAATTGATAATCAGgtatagtaaccttggatgttctctgtat------aacgccccatcctttgttacag--------------------------------------------------------------------------------------------------------------------------------------------

upper sequence: GLYMA02G01060.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ08380 (Selaginella moellendorffii), 5'ss of exon 14
GTTGTGGAAGCTGGTGGACTACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttatctttccttttccttgtagggttgaaaggtgggaagccgggatgtaatggcttgtggccttggacatccacatatctcctaccctcttctattattcttgcagctataatagctactgctacttctaccactcctaccctgtcaaataagtatttaaagttggaactttttttcatcatccataaag
||||| |  || ||||| || || ||  ||||||||||||| || ||||||||  |||||||||||||||| |  | | |||   | |||  || |       || |    |  |   | |  |                                                                                                                                             
GTTGTTGCTGCAGGTGGCCTTCACGTGATAGGCACAGAGCGCCACGAATCACGAAGAATTGATAATCAGgtatagtaaccttagatgttctctgcat------aacgccccatcctttgttacag--------------------------------------------------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348856|gb|BM893388.1|BM893388
EST:     TACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAG                         CTGCGTGGTCGAAGTGGCAGACAAGGAGATCCGGGAAGCTCACGCTTTTTC
genomic: TACATGTAGTAGGCACAGAGCGTCATGAATCACGTCGAATTGATAATCAGgtttttttat ... atccataaagCTGCGTGGTCGAAGTGGCAGACAAGGAGATCCGGGAAGCTCACGCTTTTTC
EST: gi|18039565|gb|BM307859.1|BM307859
EST:     AATCACGTCGAATTGATAATCAG                         CTGCGTGGTCGAAGTGGCAGACAAGGAGATCCGGGAAGCTCACGCTTTTTC
genomic: AATCACGTCGAATTGATAATCAGgtttttttat ... atccataaagCTGCGTGGTCGAAGTGGCAGACAAGGAGATCCGGGAAGCTCACGCTTTTTC