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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAGgtaaaaatgcacaatcttttaaatcattatcttagagttgtaggaattgtcagatcagataattttgagcttgaagttttattagtttcttgtttccaaa...

Basic information

species Glycine max
transcript GLYMA01G39430.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv07s0031g00470.t01 (Vitis vinifera), 5'ss of exon 13
GAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAGgtaaaaatgcacaatcttttaaatcattatcttagagttgtaggaattgtcagatcagataattttgagcttgaagttttattagtttcttgtttccaaa--------
||||||||||||||||||||||| ||||| ||||||   |||| |||  |||||||| |||||||||||||||| || || ||||| || ||||||  |   |||  |   ||||  ||||  | ||    ||   ||||||  |    |   || ||||      || ||||   |   |  | |||  |||        
GAATACAATATCTGCTTCACAACAGTTGAAAGATCTCCAGATGGATCGGTTCCTCGTTTACCATCTAGTAAAACGACTGGGGTTTTACCTGAGgtatgat--caccttagattaatgcatt--catatttctgattgaattgagaagaaatggaactttg----caaactttttgaaaccttatatttgtaaattgcatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207810980|gb|GD785505.1|GD785505
EST:     AATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAG                         GTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTTAAGTCGTGGATAAAG
genomic: AATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAGgtaaaaatgc ... attgtgccagGTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTTAAGTCGTGGATAAAG
EST: gi|193543700|gb|FK501605.1|FK501605
EST:     AATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAG                         GTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTTAAGCCGTGGAT
genomic: AATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAGgtaaaaatgc ... attgtgccagGTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTTAAGTCGTGGAT
EST: gi|151395403|gb|EV265280.1|EV265280
EST:     AGTAAAACAACCGGAGTTTTGCCAGAG                         GTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTTAAGTCGTGGATAAAG
genomic: AGTAAAACAACCGGAGTTTTGCCAGAGgtaaaaatgc ... attgtgccagGTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTTAAGTCGTGGATAAAG
EST: gi|207751598|gb|GD723563.1|GD723563
EST:     AATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAG                         GTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTTAAGT
genomic: AATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAGgtaaaaatgc ... attgtgccagGTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTTAAGT