Sequence
atgc intronic sequence ATGC exonic sequenceAATTTGTCATGTATATGTTGACAAGTCTGCTAATATTGATATGGCAAAGCAGATTGTTAGGGATGCAAAGACCGATTATCCTGCAGCTTGCAATGCGATGgtaattagcatttacacatcctttgcaatgcactaaataaaacatgttaatctgtatcctcctctccttttgggttttactgaattggtaggtgtgatgttattggaatttatggactatgctcatcaaaatatttttgtttttgtattcttag
Basic information
species | Glycine max |
transcript | GLYMA01G24530.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G24530.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os05g38150.1 (Oryza sativa), 5'ss of exon 13
AATTTGTCATGTATATGTTGACAAGTCTGCTAATATTGATATGGCAAAGCAGATTGTTAGGGATGCAAAGACCGATTATCCTGCAGCTTGCAATGCGATGgtaattagc-atttacacatcctttgcaatgcactaaataaaacatgttaatctgtatcctcctctccttttgggttttactgaattggtaggtgtgatgttattggaatttatggactatgctcatcaaaatatttttgtttttgtattcttag
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TATATGCCACGTATATATTGACAAATCAGCTGACATGGATATGGCAAAACATATTGTAATGGATGCAAAAATTGATTACCCAGCAGCCTGCAATGCAATGgtatctatccagtttgctaccgtgtatagtattc-aaatagattgctttta-cagtttcagttactt-tttggagtatctttcactgaatattttggacaatt----------------------------------------------------
upper sequence: GLYMA01G24530.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv08s0007g01060.t01 (Vitis vinifera), 5'ss of exon 14
AATTTGTCATGTATATGTTGACAAGTCTGCTAATATTGATATGGCAAAGCAGATTGTTAGGGATGCAAAGACCGATTATCCTGCAGCTTGCAATGCGATGgtaattagcatttacacatcctttgcaatgcactaaataaaacatgttaatctgtatcctcctctccttttgggttttactgaattggtaggtgtgatgttattgga-atttatggactatgctcatcaaaatatttttgtttttgtattcttag
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TATTTGCCATGTTTACATCGACAAGTCAGCTAATATGAAAATGGCAAAGCACATTGTTTTGGATGCGAAGACCGATTATCCTGCAGCCTGTAATGCAATGgtactccac---tccacattttctgtgactaaccatctagtttttgttt-tatctagcctagatttatagcagatgc-atcctatta--aagaacatctttaccaatcatttattaatctagtt--tcttattgtttctcacccggtattctcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207759672|gb|GD734003.1|GD734003EST: AGATTGTTAGGGATGCAAAGACCGATTATCCTGCAGCTTGCAATGCGATG GAAACTCTTCTCGTACACAAGGATCTGTCAAATAATGGTGGACTTCATGAG
genomic: AGATTGTTAGGGATGCAAAGACCGATTATCCTGCAGCTTGCAATGCGATGgtaattagca ... gtattcttagGAAACTCTTCTCGTACACAAGGATCTGTCAAATAATGGTGGACTTCATGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATTTGTCATGTATATGTTGACAAGTCTGCTAATATTGATATGGCAAAGCAGATTGTTAGGGATGCAAAGACCGATTATCCTGCAGCTTGCAATGCGATGgtaattagcatttacacatcctttgcaatgcactaaataaaacatgttaatctgtatcctcctctccttttgggttttactgaattggtaggtgtgatgttattggaatttatggactatgctcatcaaaatatttttgtttttgtattcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT