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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCAgttgagtctatgttttcatgtgttatatttataatcatttgttccttttcataatgctattacatgagtaacacacactctggtttaaatttattggaaattacaattaaataaaaagcgagacttagaagtaaatgtactttagattataggttctaattcattttgtacttttattctcaaag

Basic information

species Glycine max
transcript GLYMA01G06730.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G06730.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os03g05660.1 (Oryza sativa), 5'ss of exon 13
GTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCAgttgagtctatgttttcatg-tgttatatttataatcatttgttccttttcataatgctattacatgagtaacacacactctggtttaaatttattggaaattacaattaaataaaaagcgagacttagaagtaaatgtactttagattataggttctaattcattttgtacttttattctcaaag
|| |||||||||||  | ||||| || |||||  | ||||| |||||||| ||||| ||||||||| |||| || || ||||||||||| ||||  |    ||||||  |   | |||           ||    |    |  ||| ||  |||   |||  |  | || ||   |                                                                                                      
GTCTGGAAGAAAGTTATCTATGTCGACAGACTTGTGCAGCTGTTCAGATACGTACCACGTGAACAACTGACAATTCCTGATTTTGTCTTCCAgt--atgtaatgtttctagaattttaagaggtctgctataaactagggtcaatactgacattc--tgacaattaaactctgcag------------------------------------------------------------------------------------------------------

upper sequence: GLYMA01G06730.1 (Glycine max), 5'ss of exon 15
lower sequence: LOC_Os10g30750.1 (Oryza sativa), 5'ss of exon 13
GTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCAgttgagtctatgttttcatgtgttatatttataatcatttgttccttttcataatgctattacatgagtaacacacactctggtttaaatttattggaaattacaattaaataaaaagcgagacttagaagtaaatgtactttagattataggttctaattcattttgtacttttattctcaaag
|||||||||||||| || || || ||||| ||  | || || |||||||||||||| || |||||| | || || || ||||||||||||||||     |  | |   ||  ||  | ||||     ||||    |  || |   |    || |  | |     |   |||     ||| |                                                                                                
GTTTGGAAGAAAGTTGTCTACGTGGATAGGCTTGTGCATCTGTTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCAgtaagtaccctttacaca-atgccagattttggcacattgccacagttgctagaaa--atcatgtaatatttatgtacttgtacttacag-----------------------------------------------------------------------------------------------

upper sequence: GLYMA01G06730.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM2G100707_T01 (Zea mays), 5'ss of exon 13
GTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCAgttg--agtctatgttttcatgtgttatatttataatcatttgttccttttcataatgctattacatgagtaacacacactctggtttaaatttattggaaattacaattaaataaaaagcgagacttagaagtaaatgtactttagattataggttctaattcattttgtacttttattctcaaag
|| ||||||||||| |||||||| || |||||  | ||||| |||||||||||||| ||||||||  | ||||| || |||||||| || ||||    | |||| ||  |  |  | | |  ||| |    |  | |  ||   | | | | ||  | | | |||   |  ||   |                                                                                                      
GTCTGGAAGAAAGTTGTATATGTCGACAGACTTGTGCAGCTATTCAGATATGTACCACGTGAACAGCTCACCATTCCTGATTTTGTGTTCCAgtaagcaatcta-gtacttgttagcttttcttagag--gtccgctagttactagact-ccat--cttaaataatcaatcctgcag------------------------------------------------------------------------------------------------------

upper sequence: GLYMA01G06730.1 (Glycine max), 5'ss of exon 15
lower sequence: GRMZM5G836588_T01 (Zea mays), 5'ss of exon 13
GTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCAgttgagtctatgttttcatgtgttatatttataatcatttgttccttttcataatgctattacatgagtaacacacactctggtttaaatttattggaaattacaattaaataaaaagcgagacttagaagtaaatgtactttagattataggttctaattcattttgtacttttattctcaaag
|| ||||||||||| |||||||| ||||| ||  | ||||| |||||||||||||| || || ||| | || || || || ||||| |||||||       | ||   | ||    ||| ||  |    || |  | |||   |     || |  |  | | ||    ||| ||||   |  || ||| |                                                                                       
GTCTGGAAGAAAGTTGTATATGTGGATAGGCTTGTGCAGCTGTTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCAgt-------aagtagccctgcacgatacttccagctcttggcacatttgtttgcg--tactgtaaaactgac-tgtact-tggtaacatgttcttgcag--------------------------------------------------------------------------------------

upper sequence: GLYMA01G06730.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 13
GTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCAgttgagtctatgttttcatgtgttatatttataatcatttgttccttttcataatgctattacatgagtaacacacactctggtttaaatttattggaaattacaattaaataaaaagcgagacttagaagtaaatgtactttagattataggttctaattcattttgtacttttattctcaaag
|| |||||||||||||||||||||||  ||||  | ||||| |||||||| || || ||||| || ||||| ||||| || ||||| |||||||||||| | | | ||| | |   | || |  | |  ||      | |  ||||     |||  | |    | |||| |||  || |||   |||    ||                                                                                    
GTGTGGAAGAAAGTGGTATATGTTGACCGACTCATGCAGCTGTTCAGATACGTTCCACGTGAGCAGTTGACAATCCCCGACTTTGTGTTTCAgttgagttt-tctgttctttttcaaaatctggacttgttctcaattatcaataaccaagtta-gtaaccgtcccaca-tctaattaaaaggcattcctgatag----------------------------------------------------------------------------------