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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacctttcagctggattttcattcacatgattcagttttgaataacttttcagctgatggttggatgaatgtggttgcttgcag

Basic information

species Glycine max
transcript GLYMA01G03930.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 15
lower sequence: AT1G17960.1 (Arabidopsis thaliana), 5'ss of exon 8
TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacctttcagctggattt---tcattcacatgattca-gttttgaataacttttcagctgatggttggatgaatgtggttgcttgcag
 | || ||||| || |||||||| || || |||||||||||||| |  || ||||||||   || |||||||||||||||||| ||| | |||||| |  |     | ||   |||   |  |||   || ||   ||| |  ||  |||   |   |||  |       || || ||  |  |||
ATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAGgttag-gctcccaaactctttttagttttttcctctgttttttgttcttgatctcttacaataagattttgatccttatttgcttcgtaccag

upper sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 15
lower sequence: AT5G26830.1 (Arabidopsis thaliana), 5'ss of exon 16
TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtt-tgcacc----tttcagctggattttcattcacatgattcagttttg--aataacttttcagctgatggttggatgaatgtggttgcttgcag----
||||| ||||| ||||||||||| || || ||||||||||||||||  || ||||||||| ||| |||||||||||||||||| ||||| |||||| | | ||    ||     | | ||||| |    |||  |   | |||    || |  | |||  | || ||  |||  | | || || |  |     
TTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAGgttatactcccaaattctttttagtttttcttgtctatgcatttctcttgctgttatcagtgcaggagttgattttatgtttcttgtggcctcaaatcag

upper sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 5'ss of exon 16
TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacctttcagctggattt------tcattcacatgattcag---ttttgaataacttttcagc-tgatggttggatgaatg--tggt-tgcttgcag
 | ||||||||||||||||| || || ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| || |||||||      ||||  ||   ||      || |||   || | ||    || ||  |   | | |||  | | | ||  ||   ||  |  | |||||||||
ATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTTTCTGATGCATTAAGTAGGAAATTCCAGTGTGCAACATTACAGgtttatcatgttcacttgctcttgttcattctttcgtgtgctgcaacacttgtgctttcttgtgcagaattaggttttaattgttggataatgtgcttgcag

upper sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 15
lower sequence: Vv19s0015g00470.t01 (Vitis vinifera), 5'ss of exon 16
TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacctttcagctggattttcattcacatgattcagttttgaata----acttttcagc------tgatggttggatgaatg--tggt-tgcttgcag
 | ||||||||||| |||||||| || ||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||||||| || |||||||   | | | | || | ||||  |   | | | |  | |   | |     ||||||  |       | | | ||  || | ||  |  | || ||||||
ATAAATGAAGGGGACGGTGCATTTTATGGACCAAAGATTGACATTAGTGTTTCTGATGCATTAAATAGGAAATTCCAGTGTGCAACATTACAGgtttat-catgttaacttgctttttttattctttagtgtgctgctacttttgtactttttggtgcggaattaggttttaattagtggataatgtggttgcag

upper sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 15
lower sequence: PP1S400_36V6.1 (Physcomitrella patens), 5'ss of exon 16
TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacctttcagctggattttcattcacatgattcagttttgaataacttttcagctgatggttggatgaatgtggttgcttgcag--------------
 | ||||||| ||||||||| || || ||||||||||| |||||||  || | |||||||||||  || || || |||||||| ||  | |||||  | |   |  |        || ||| | || ||    | ||  || |   || | || |    | | |  || |  |   || ||               
ATTAATGAAGCGGATGGTGCCTTTTATGGACCAAAGATTGACATCACCGTTTTTGATGCATTGAAGAGAAAGTTTCAGTGTGCTACAATCCAGgtgggtaggctaaattgttgcatttattga-ataatctcatgtt--attatggttgatcttagaaattgttagatttcatcagttacaactccgtcatttcta

upper sequence: GLYMA01G03930.1 (Glycine max), 5'ss of exon 15
lower sequence: EFJ07136 (Selaginella moellendorffii), 5'ss of exon 17
TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacctttcagctggattttcattcacatgattcagttttgaataacttttcagctgatggttggatgaatgtggttgcttgcag
 |||| ||||| |||||||| || ||||| || ||||| ||||||   |||||||||||| |||  ||||| |||||||| |||||  | ||||| |     |    |||    | |  ||      |    |||||   || |||        | |                         
ATGAACGAAGGAGATGGTGCCTTTTACGGGCCTAAGATTGACATCCAAGTATCTGATGCACTGAACAGGAAGTTCCAGTGCGCAACAATTCAGgtcttgttttcagggcttttgtcttttttcttctaacgtgttttttttatcttcgtgatctacgcag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566760|gb|AW234392.1|AW234392
EST:     TCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG                         CTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
genomic: TCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacct ... ttgcttgcagCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
EST: gi|10237509|gb|BE806397.1|BE806397
EST:     TCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG                         CTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
genomic: TCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacct ... ttgcttgcagCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
EST: gi|24136706|gb|BU927216.1|BU927216
EST:     TCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG                         CTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
genomic: TCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacct ... ttgcttgcagCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
EST: gi|151406807|gb|EV276622.1|EV276622
EST:     TCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG                         CTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT
genomic: TCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAGgtttgcacct ... ttgcttgcagCTTGACTTCCAGCTTCCTGATCGTTTTAAGTTGGAATTCTCAGCTGAGGAT