1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
TGGGCTGAGGTGCTGTCTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatatttttttctttttttggggaggtggtggggtactgtttagggacttgcctttgtgtttaatgttcaaaatcccctattttccatgtttactgttc...
species | Glycine max |
transcript | GLYMA01G02480.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGAEST: gi|16277230|gb|BI942273.1|BI942273
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
EST: CTGCTGATGCTTTCTCTGCATNTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGAEST: gi|193696079|gb|FK637547.1|FK637547
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
EST: TGGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGTCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGEST: gi|58024369|gb|CX711110.1|CX711110
genomic: T-GCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGG-CGCAAGTTCCGGGAGACCATTCTTGCTCTTGG
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGAEST: gi|31310299|gb|CD395502.1|CD395502
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGAEST: gi|209720203|gb|BW674541.1|BW674541
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGEST: gi|254336792|gb|GR842971.1|GR842971
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAG-AAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGG
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGAEST: gi|58021287|gb|CX708029.1|CX708029
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGAEST: gi|193704314|gb|FK644764.1|FK644764
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
EST: TCTGCATTTGTAGGATTGCTTGGTATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGAEST: gi|58018001|gb|CX704743.1|CX704743
genomic: TCTGCATTTG-AGGA-TGC-TGG-ATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGAEST: gi|16284148|gb|BI945931.1|BI945931
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCEST: gi|31462999|gb|CD405027.1|CD405027
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGC
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGAEST: gi|58022383|gb|CX709124.1|CX709124
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGAEST: gi|17022026|gb|BM093060.1|BM093060
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
EST: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAG GCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
genomic: CTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatattttt ... acgtacacagGCTGTTAAAGAAACGGGGCGCAAGTTCCGGGAGACCATTCTTGCTCTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCTGAGGTGCTGTCTGCTGATGCTTTCTCTGCATTTGAGGATGCTGGATTGGATAATGACAAGgtatatttttttctttttttggggaggtggtggggtactgtttagggacttgcctttgtgtttaatgttcaaaatcccctattttccatgtttactgttc
- - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgggg