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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaacctaagttcttttttattacccatttgctgtttgaaccttcaa...

Basic information

species Glycine max
transcript GLYMA20G25120.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 5'ss of exon 13
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaacctaagttcttttttattacccatttgctgtttgaaccttcaa
|| || || || || |||||||| || || ||||| ||||||||||| ||||| ||||| |||||||| ||||||||||| ||||| || |||||||| |||  ||| ||||  |||||||   |  || |  |   |  ||    |     ||   ||||||      |  |||  |||| |                
TTCACTCCTCATCCACATGCTGGTGATAAGTGGTGCATCTATCCAAGCTATGACTATGCTCACTGCATGGTGGATTCTCTTGAGAACATTACACATTCGgtactttgcctttt-ctcaattagattgagttagttgcattatggcatgat--gtggactaagtg-----tggttattcattag----------------

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G032049_T01 (Zea mays), 5'ss of exon 13
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaacctaagttc--ttttttattacccatttgctgtttgaaccttcaa
|| ||||| || || |||||||| ||||| |||||| ||||||| || ||||| || || || ||||| ||||||||||| || || ||||||||||| |||| ||  | ||   |   | |  ||||  |  |  |  | ||   ||     ||||   |  |   | | ||||  |  |||||||              
TTCACCCCCCATCCACATGCTGGCGACAAGTGGTGTGTCTATCCGAGCTATGACTACGCTCATTGCATGGTGGATTCTCTTGAAAACATCACACATTCGgtaatttcacctttttt---tcttttccaaatagtttt-tagttggtttaacaataacaataactaagtctgttatgtcttatttgctag------------

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G048012_T01 (Zea mays), 5'ss of exon 12
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtctttcactcaatttcctccaggtgttgatacaattttct--tgctggtaacctaagttcttttttattacccatttgctgtttgaaccttcaa
|| ||||| || || |||||||| || || |||||||||||||| || ||||| ||||| || ||||| ||||||||||| || || ||||| ||||| |||| ||   | |   |   |||||     || ||||     |||     |    | |  |         || | |||    ||   |||| |         
TTCACCCCTCATCCACATGCTGGTGATAATTGGTGTATCTATCCGAGCTATGACTATGCTCATTGCATGGTGGATTCTCTTGAAAACATCACGCATTCGgtaattttcttattttttcttttccaaatagttttgagttggtttaacaataacaggatacaggaactgattctgttatttcttatttgttag---------

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 14
lower sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 14
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaacctaagttcttttttattacccatttgctgtt-tgaaccttcaa-------------------------------------------------------------------------------
||  | || || ||| | ||||| ||||| |||||||||||||| |||||||||||||| ||||||| ||| |||||||| |||||||| || ||||| || |||  ||||||      |||   | |  ||  |    | ||    |     || |    |   |||   | ||   | || | ||  | ||  |||                                                                                 
TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGgttagtc-tctttcgagatcttttgcctatttgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 14
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtct--ttcactcaatttcctccaggtgttgatacaattttcttgctggtaacctaagttcttttttat-tacccatttgctgt-ttgaaccttcaa
|||||||| || || ||| | || ||||| |||||||| |||||||||||||||||| | || ||||||||||||||||| || ||||| |||||||| ||| |||   |  ||   | | |||||| | | |  | | |   ||||||||    ||    ||| | ||| | || |   ||||| |  |  || |   |   
TTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCGgtatgttccttgctttgataagtttccttctgttactaagat--ttttcttgt--atatttcaagatgtttctcatgtttgcatttccattgctgtatagtatg

upper sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaacctaagttcttttt-tattacccatttgctgtttgaaccttcaa-
||||| || ||||| |||||||||||||| |||||| | ||||||||||| |||||||| || |||||||| |||||||| ||||| ||||| ||||||||| | |  ||| | ||   | |||||||  | || ||     | | ||  |  ||   |  |   |   | | |||    || | |  |||||  ||  | 
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctcccttgcccttt-tatcctccat-ttttaatgtgtgtattttcttattacattttgcaataactattttaagagttcgtttcttgaaattttgat

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389687|gb|CA852894.1|CA852894
EST:     ATGATTATGCACACTGCATTGNGGATTCTCTAGAGAATATCACACATTCA                         CCGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
genomic: ATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtc ... tctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
EST: gi|151409608|gb|EV279416.1|EV279416
EST:     ATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCA                         CTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG
genomic: ATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtc ... tctcatgcagCTGTGTACACTTGAATTTGAGACACGTCGTGCATCATACTATTGGTTGTTG