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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgtgcaataaattctttttcctggatttgtctttgttttcccagataataacttaaaatttggatgggtcaaaattcag

Basic information

species Glycine max
transcript GLYMA20G25100.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 5'ss of exon 7
TTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgt--gcaataaattctttttcctggatttgtctttgttttcccag-ataataactt----aaaatttggat--gggtcaaaattcag------------------------------------------------------------------------------
||||| | || |||||||||||||  ||||| ||||||||  ||||||||||| | || ||||| ||||||||||||||||||||||| |||||||| ||||  ||  |  | | |||  | |  |    |  |||| ||||    ||  | | ||    ||||||||  |    ||  |  | ||                                                                               
TTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAACTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAATGGCTTGTCAGgttagctttctactttttcacttttagcatttcttgtattcctgttatttttatttttacaaaatttgtttttaagtacatgtacattcctcttgggggctctgagagaaagcttctgaatatatgggtctatagttatttcattcttacaaaatttgtttttag

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 5'ss of exon 7
TTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgtgcaataaattctttttc---ctggatttgtctttgttttcccagataataactt----aaaatttggat--gggtcaaaattcag-----------------------------------------------------------------------------
||||| | || |||||||||||||  ||||| ||||||||  |||| |||||| | || ||||| | ||||||||||||||||||||| |||||||| |||| |  |   | | |||||    |     | ||||   || |    ||  | | ||    ||||||||  |    ||  |  | ||                                                                              
TTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAGCTGGCATGCTTCCTTCAACAAATGGCTTGTCAGgtacgctttctacgttttcacatttagcatatcttgtattcctgtcatttttatttttacaaaatttgtttttaagtacatgtacattcctcttgggggctctgagagaaagcttctgaatatatgggttatagttatttaattcttgcaaaatttgtttttag

upper sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv00s0581g00010.t01 (Vitis vinifera), 5'ss of exon 4
TTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgtgcaataaattctttttc---ctggatttgtctttgttttcccagataataactt----aaaatttggat--gggtcaaaattcag-----------------------------------------------------------------------------
||||| | || |||||||||||||  ||||| ||||||||  |||| |||||| | || ||||| ||||||||||||||||||||||| |||||||| |||| |  |   | | |||||    |     | ||||   || |    ||  | | ||    ||||||||  |    ||  |  | ||                                                                              
TTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAATGGCTTGTCAGgtacgctttctacgttttcacatttagcatatcttgtattcctgtcatttttatttttacaaaatttgtttttaagtacatgtacattcctcttggagggtctgagagaaagcttctgaatatatgggttatagttatttaattcttgcaaaatttgtttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208093647|gb|GD892294.1|GD892294
EST:     GAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAG                         GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTG
genomic: GAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGTGGCTTGTGAGgtgcaataaa ... caaaattcagGTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTG