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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatcatgttttgttcatcacagttatttttctgtttatcacacagactatctcattcatgttatttttatttttttcag

Basic information

species Glycine max
transcript GLYMA20G24070.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 13
AGTGCTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatcatgttttgttcat-cacagttatttttctgttt-atcacacagactat-ctcattcatgttattt--------ttatttttttcag----
|||||||||||  ||||||||||| ||| |||||||||||| || || ||||||||   |       | ||    || | |       || ||| || ||  ||    || | ||    || |   ||         || |  |||||||    
AGTGCTATTGGACAGGGAATGACTCGAAAGGATCATTCTGAAGTCTCTAACCAGgtgcgtatcatcatcttagaaattcgcctgcccgttcctgcttgattgcaggagctcttcttgaccacgaagttcgagccagattctaattttcagtttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120495604|gb|EH223771.1|EH223771
EST:     CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG                         CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: gi|21256304|gb|BQ453192.1|BQ453192
EST:     CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG                         CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: gi|16279439|gb|BI943437.1|BI943437
EST:     CTATTGGTGAGGGAATGACTAGTATGGATCATTCTGATGTGTCCAACCAG                         CTCTATGCAAATTATGCTATTGGA
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGA
EST: gi|16276744|gb|BI942021.1|BI942021
EST:     CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG                         CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: gi|37996030|gb|CF807619.1|CF807619
EST:     CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG                         CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: gi|15001046|gb|BI321860.1|BI321860
EST:     CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG                         CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: gi|16278548|gb|BI942962.1|BI942962
EST:     TATTGGTGAAGGAATGACTAGAAGGGATCATTCTGATGTGTCCAAACC-G                         CTATATGCCAATTATGCTATTTGAAACGATGTCCCGGCAATGAAAGCAGT
genomic: TATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAA-CCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGT
EST: gi|21601974|gb|BQ612305.1|BQ612305
EST:     CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG                         CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
EST: gi|19269615|gb|BM885871.1|BM885871
EST:     CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAG                         CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG
genomic: CTATTGGTGAGGGAATGACTAGAAGGGATCATTCTGATGTGTCCAACCAGgtctctgatc ... tttttttcagCTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTG