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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAATGTTGCTAGGTTTGACGGACATGCTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGgtatgtgagaaaatgtaactagtaaagtatgatgattgtttatacagtattcttattgtactcttaaatttgacag

Basic information

species Glycine max
transcript GLYMA20G21330.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 5'ss of exon 12
GCAAATGTTGCTAGGTTTGACGGACATGCTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGgtatgtgag-----aaaatgtaactagtaaagtatgatgattgtttatacagtattcttat-tgtactcttaaatttgacag
 |||||||||| | |||||| || |||| ||| ||||| ||||| || || |||||||| ||||| |||||||||||||||||         | | || ||   | ||| | |     || ||| |    |||||| || | |        | |  ||||
TCAAATGTTGCAAAGTTTGAGGGGCATGTTGGACCAGTGACTGCTATGTCCTTCTCTGAAAATGGTTACTTCCTTGCGgtatgaatctctccatagtgcaatctgcaaaatgttgaatttcttttt----tattctgatatatgtatcatcactgtacag

upper sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 14
lower sequence: AT2G33340.1 (Arabidopsis thaliana), 5'ss of exon 14
GCAAATGTTGCTAGGTTTGACGGACATGCTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGgtatgtg------agaaaatgtaactag------taaagtatgatgattgtttatac-agtattcttattgtactcttaaatttgacag
|||||||| |||| |||||| |||||  |||||  ||| || || |||||||||||||| ||||| |||||||| |||||  ||       | |||||   |  ||      || ||  | |    || ||| |  | |  | || || |  || |  | |||||||
GCAAATGTGGCTAAGTTTGATGGACACACTGGGGAAGTTACAGCTATATCTTTCTCTGAAAATGGTTACTTCCTCGCGgtgagtactttgaacaaaatacgagaagagagaatacagcttaagttatgcttacatgaatgattttctttttgtcctggaattgacag

upper sequence: GLYMA20G21330.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 5'ss of exon 14
GCAAATGTTGCTAGGTTTGACGGACATGCTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGgtatgtgagaaaatgtaactagtaaagtat----gatgattgtttatacagtattcttattgtactcttaaatttgacag
|||||||| || || |||||||| || | |||| | |||||||| ||||||||||| || ||||| |||||||||||||||||||        ||| ||| |  ||||    || ||      ||||| |  |  | || ||  ||| |  ||   ||
GCAAATGTGGCAAGATTTGACGGGCACGTTGGGGCTGTAACTGCTATATCTTTCTCAGAAAATGGTTACTTCCTTGCGgtatgtgtttt--cctaattagaagtgtatatgtgaggaagtgacatacatttctgattttttatgcttgatgtttttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207779928|gb|GD753949.1|GD753949
EST:     CTGGGCCAGTAACTGCCATATCTTTCNCTGAGAATGGATACTTCCTTGCG                         ACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAAC
genomic: CTGGGCCAGTAACTGCCATATCTTTCTCTGAGAATGGATACTTCCTTGCGgtatgtgaga ... aatttgacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAAC