Sequence
atgc intronic sequence ATGC exonic sequenceTTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATgtatgtttatattaaactttatctacctctttctttatatttatgatttatctcaccatcttcatcctgtttgatattttgcctctactgatgctatgcattttatccctgcag
Basic information
species | Glycine max |
transcript | GLYMA20G00320.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 14
lower sequence: LOC_Os10g34710.1 (Oryza sativa), 5'ss of exon 13
TTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATgtatgtttatattaaactttatctacctctttctttatatttatgatttatctcaccatcttcatcctgtttgatattttgcctctactgatgctatgcattttatccctgcag
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GTGGCTTGTTGAACAAATTAACAAGTCTCTTTCAGTTGGCAAGCGTCGAACTGGGAGATCAATCAGCATTCTTGATATCTATGGCTTTGAATCATTCGATgta-atgtac-ttccatttgacatgc---tgtcatcatattt------taattggcaaatggtttctcatgtcataacacaaaattgcag------------------------
upper sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G139583_T02 (Zea mays), 5'ss of exon 13
TTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATgtatgtttatattaaactttatctacctctttctttatatttatgatttatctcaccatcttcatcctgtttgatattttgcctctactgatgctatgcattttatccctgcag
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ATGGCTTGTAGAACAAATTAATAAGTCTCTCTCAGTTGGCAAGCGTCGAACTGGGAGATCTATCAGTATTCTTGATATCTATGGCTTTGAATCATTTGATgta-atatacctt---ttttacctaaagttgtcat-atattagaagggcaggcc-----tgttgcgatggtgagaattgtctcactaa-gttaccaggtagcgggttcgaa---
upper sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 14
lower sequence: GRMZM2G113202_T01 (Zea mays), 5'ss of exon 13
TTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATgtatgtttatattaaactttatctacctctttc-tttatatttatgatttatctcaccatcttcatcctgtttgatattttgcctctactgatgctatgcattttatccctgcag
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GTGGCTTGTAGAACAAATTAATAAGTCTCTCTCAGTTGGCAAGCGTCGAACTGGGAGATCTATCAGTATTCTTGATATCTATGGCTTTGAATCATTTGATgtaa---tgcacttttctttacctaaagttgtcatatatattaa-attccatatagttacttctgacat-tatcatattt-gcag------------------------------
upper sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 14
lower sequence: AT3G19960.1 (Arabidopsis thaliana), 5'ss of exon 14
TTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATgtatgtttatatta---aactttatctacctctttctttatat--ttatgatttatctca-ccatcttca----tcctgtttgatattttgcctctactgatgctatgcattttatccctgcag---------------------------------------------------------------------------
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CTGGCTGGTTGAACAGATCAACAAATCTCTTGCTGTGGGAAAGAGGCGAACTGGCAGATCTATCAGTATTCTTGATATCTACGGCTTTGAATCATTTGATgtatgttcctgttctctggctctctgagctttctcctgaaaaagattacaattgctaccagctatcattagaccttcagtttgcaatgatacc--aaacagtgccaaatagtagaactctatatctatgtgcttttgtgtttccatttcttgatttatgtgtcttattgatttgctatacgactttcattcctctgcag
upper sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 14
lower sequence: AT1G50360.1 (Arabidopsis thaliana), 5'ss of exon 14
TTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATgtatgtttatattaaa-ctttatctacctctttctttata----tttatgatttatct-caccatcttcatcctgtttgatattttgcctc--tactgatgctatgcattttatccctgcag------------
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CTGGCTAGTTGAACAGATTAACAAATCTCTTGCGGTGGGAAAGAGGAGAACTGGCAGATCCATCAGCATTCTTGATATCTATGGCTTTGAATCATTCAATgtatgctggtttttagtctccctttgcgttttactgcatgaacttacataagctatctgcacattacatcttctgtgttacattttgtaccaatgttaatttggtttgctgaataaatactatacatgttgcag
upper sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 14
lower sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 13
TTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATgtatgtttatattaaactttatctacctctttctttatatttatgatttatctcaccatcttcatcctgtttgatattttgcctctactgatgctatgcattttatccctgcag
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CTGGCTGGTCGAACAAATCAACAAGTCACTTGCTGTAGGAAAACGGCGTACTGGCAGATCCATTAGCATTCTTGATATCTATGGATTTGAATCATTCGATgtatg---atatta---tttagtttctgctgtaaata-atttttcattccccccat--tccccattgtccccctaaatttataaatattcatgttacatattctgtttttccag
upper sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 14
lower sequence: PP1S199_21V6.1 (Physcomitrella patens), 5'ss of exon 13
TTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATgtatgtttatattaaactttatctacctctttctttatatttatgatttatctcaccatcttcatcctgtttgatattttgcctcta--ctgatgctatgcattttatccctgcag
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TTGGCTGGTTCAACGTGTCAACAAGTCTTTGGAAGTTGGCAAAACACTGACTGGAAGATCAATCAGCATTCTAGATATTTATGGATTTGAATCTTTCCAGgta-gttcatcttca-ctgtttctgatgtatgcactattttgatcaattgtttt-tggcattgatgct-tttattgttgggaccatagtctcctaccgttcgct------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208104539|gb|GD904530.1|GD904530EST: CCGGCAGATCAATCAGTATTCTAGATATCTATGGCTTTGAATCTTTCAAT AGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGATTACAG
genomic: CCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATgtatgtttat ... atccctgcagAGGAACAGTTTTGAACAGTTCTGCATAAATTATGCAAATGAGAGATTACAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGTTGGTTGAACAGATAAATAAATCACTTGCTGTTGGCAAAAGACGTACCGGCAGATCAATCAGTATTCTAGATATCTACGGCTTTGAATCTTTCAATgtatgtttatattaaactttatctacctctttctttatatttatgatttatctcaccatcttcatcctgtttgatattttgcctctactgatgctatgcattttatccctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA