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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtatgttcttgatcttttatgattgatgggcattcaaaatcatttatactaactcctctatgttcccattttgctttgttcttaaatgattaaagcttgg...

Basic information

species Glycine max
transcript GLYMA19G37310.3
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37310.2 (Glycine max), 5'ss of exon 14
lower sequence: AT3G53090.1 (Arabidopsis thaliana), 5'ss of exon 12
ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtatgttcttgatctttta-tgattgatgggcattcaaaatcatttatactaactcctctatgttcccattttgctttgttcttaaatgattaaagcttgg
||| |  || || ||  |||| || |||||||| || ||||||||||| || ||| | ||||| |||||||||||||||||| | || | |||||| || || |||| |||| |||    | |   |||    ||  | ||  | | |  ||| |    | | || |  || |||||| |  |    ||            
ACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAACCTTCATCATCCATAAAgtttgtttttgaacttaagcttagaaatgtatgtttgatattctgtttggtaattttgttttcttacttttgtgctttttcatcttctgcag---------

upper sequence: GLYMA19G37310.2 (Glycine max), 5'ss of exon 14
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 5'ss of exon 12
ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtatgttcttgatcttttatgattgatgggcattcaaaatcatttatactaactcctctatgttcccattttgctttgttcttaaatgat-taaagcttgg
||| ||||| ||||||||||||||||||||||| || ||||||||||| || ||||||||||| || ||| || |||||||| ||||||| || || |||||||| | | |||||| |||     ||     |     || || | |  | |  |   |||  ||  ||| | | |       | ||| | |   | ||| 
ACCAAAAGAACGCTGTATGCTTCTTAAATTTGTGACAAGTTGTTCTCGAGCTCCATTACTTGGATTTAAACACCTGCAGCCAACTTTTACTATTCATAAGgtatgctttggatcttatatc-cacataaatttcattcattatatctttttaagcacttatcatcttattattcatatcatgaatatggtatgtggtttgt

upper sequence: GLYMA19G37310.2 (Glycine max), 5'ss of exon 14
lower sequence: EFJ30786 (Selaginella moellendorffii), 5'ss of exon 11
ACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtatgt---tcttgatcttttatgattgatgggcattcaaaatcatttatactaactcctctatgttcccattttgctttgttcttaaatgattaaagcttgg
    |||||  | ||     | || |||||||| || || || |||||||| || || || || |||||| |||||||||| || ||||| ||||||||||| ||    |||| | | |  | | ||   |  | |||    |  | | |  ||                                                 
TGTCAAAGAAAGATGCGCTGTGCTCAAATTTGTAACGAGCTGCTCTCGTGCACCTTTGCTGGGATTCAAACACTTGCAGCCTCCGTTTACAATCCACAAGgtttggcaatcttaagcatcaacggttttagctcgttcccgtttttctttcttag------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407290|gb|EV277105.1|EV277105
EST:     CCCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAG                         GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGAT
genomic: CCCCATTACTTGGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtatgttctt ... gtttacaaagGTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGAT
EST: gi|207688927|gb|GD672272.1|GD672272
EST:     ACCTTTTACCATCCACAAG                         GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGAT
genomic: ACCTTTTACCATCCACAAGgtatgttctt ... gtttacaaagGTTGCATGTGATGTTCCTCTTTGGGCAACAATTGGAGGACAAGATGTAGAT
EST: gi|193376620|gb|FK343181.1|FK343181
EST:     GGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAG                         GTTGCATGTGATGTTCCTCTTTGGGCAACAATTGG
genomic: GGGTTCAAATACTTGCAGCCACCTTTTACCATCCACAAGgtatgttctt ... gtttacaaagGTTGCATGTGATGTTCCTCTTTGGGCAACAATTGG